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ProteomicsTMT spikes - Using R and Bioconductor for proteomics data analysis
Expected reporter ion ratios: Erwinia peptides: 1:1:1:1:1:1 Enolase spike (sp|P00924|ENO1_YEAST): 10:5:2.5:1:2.5:10 BSA spike (sp|P02769|ALBU_BOVIN): 1:2.5:5:10:5:1 PhosB spike (sp|P00489|PYGM_RABIT): 2:2:2:2:1:1 Cytochrome C spike (sp|P62894|CYC_BOVIN): 1:1:1:1:1:2
ORGANISM(S): Erwinia carotovora 
2012-03-07 | PXD000001 | Pride
Spikes Tmt Eriwinia 
ProteomicsOil body - LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies
LC-MS/MS methods for absolute quantification and identification of proteins associated to chimeric plant oil bodies.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2012-03-05 | PRD000581 | Pride
ProteomicsHuman exosome proteome - Human urinary exosomes as innate immune effectors
Proteomics study of human urine exosomes. This data describes the proteomic complement of the human exosomal urine fraction from 10 healthy volunteers (5 male, 5 female) aged 23 to 36 years. 50 µg protein from each sample were fragmented on a 4%/12% SDS-polyacrylamide gel. Following staining, each g...
ORGANISM(S): Homo sapiens (Human) 
2016-08-25 | PXD000117 | Pride
Exosome Urine Human Proteome 
ProteomicsDynamic proteomic profiling of extra-embryonic endoderm differentiation in mouse embryonic stem cells
During mammalian pre-implantation development, the cells of the blastocyst’s inner cell mass differentiate into the epiblast and primitive endoderm lineages, which give rise to the fetus and extra-embryonic tissues, respectively. Extra-embryonic endoderm differentiation can be modeled in vitro by in...
ORGANISM(S): Mus musculus (Mouse) 
2015-06-13 | PXD001901 | Pride
Extra-embryonic endoderm (xen) stem cells Differentiation Tandem mass tags (tmt) Quantitative proteomics Pluripotency 
TranscriptomicsRNA-seq of hepatocytes obtained through step-wise differentiation of hIPSCs from a patient with A1AT deficiency and its point mutation-corrected isogenic hIPSC line. Comparison to primary hepatocytes from a healthy donor and an A1AT-deficient patient.
A1AT deficiency is an autosomal not recessive disorder caused by mutations in the SERPINA1 gene. Individuals with the Z variant retain polymerised protein in the endoplasmic reticulum of hepatocytes, predisposing them to liver disease. This study primarily aimed to uncover the molecular mechanisms t...
ORGANISM(S): Homo sapiens 
2018-06-26 | E-MTAB-6781 | biostudies-arrayexpress
ProteomicsLOPIT-DC subcellular map of U-2 OS cells
Generation of a high-resolution subcellular localisation map for the proteome of the human cancer cell line U-2 OS, using the newly developed LOPIT-DC method. Comparison of the results generated using LOPIT-DC with data generated using the well-established hyperLOPIT method and data mining regarding...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-11-23 | MSV000088434 | MassIVE
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