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TranscriptomicsTranscription profiling of Arabidopsis thaliana seedlings treated with synthetic defense elicitors 3,5-Dichloroanthranilic acid (DCA) and 2,6-Dichloroisonicotinic acid (INA)
DCA (3,5-Dichloroanthranilic acid) is a newly identified synthetic defense elicitor. To perform a comparative analysis of defense responses triggered by DCA and the structurally related defense inducer INA (2,6-Dichloroisonicotinic acid) Affymetrix chip experiments were performed with Arabidopsis th...
ORGANISM(S): Arabidopsis thaliana 
2009-03-28 | E-GEOD-13833 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of B. thuringiensis 407 nprA::lacZ and an isogenic delta-nprR-nprX strain
B. thuringiensis 407 nprA::lacZ strain was compared with an isogenic delta-nprR-nprX strain to explore the effects of nprR-nprX deletion. NprR is a transition state regulator which is activated towards the end of the exponential phase by a part of the signaling peptide NprX. We made direct compariso...
ORGANISM(S): Bacillus thuringiensis Bt407 
2010-09-10 | E-TABM-790 | biostudies-arrayexpress
UnknownLow Mass Blood Peptides Discriminative of Inflammatory Bowel Disease (IBD) Severity: A Quantitative Proteomic Perspective.
Not available
S-EPMC4762526 | biostudies-literature
TranscriptomicsTranscriptional response of Arabidopsis thaliana to exogenous application of N-hydroxypipecolic acid (NHP).
Previous studies from our laboratory have shown that the resistance increase observed after biological systemic acquired resistance (SAR) induction in plants can be mimicked by exogenous plant treatment with N-hydroxypipecolic acid (NHP, Hartmann et al., 2018, Schnake et al., 2020). Moreover, exoge...
ORGANISM(S): Arabidopsis thaliana 
2021-05-03 | E-MTAB-10230 | biostudies-arrayexpress
TranscriptomicsRole of NPR1 in SA mediated transcription
Affymetrix expression analysis was used to validate the role of NPR1 in SA mediated transcription. The RNA of col-0 and npr1-1 mutant were isolated after 24hr water and SA treatment.The ATH1 gene chip was used for expression analysis.
ORGANISM(S): Arabidopsis thaliana 
2013-12-24 | E-GEOD-51626 | biostudies-arrayexpress
ProteomicsLow mass blood peptides discriminative of IBD severity
The enriched low mass proteome is unexplored as a source of differentiators for diagnosing and monitoring Inflammatory Bowel Disease (IBD) activity, less invasively than colonoscopy and histopathology. Differences in the enriched low mass plasma proteome (<25kDa) were assessed by label-free quantita...
ORGANISM(S): Homo sapiens (Human) 
2015-11-06 | PXD002821 | Pride
Biomarker Ibd Mrm Spp24 Proteomic Guc2a 
TranscriptomicsSalicylic acid-induced gene expression in wild-type Col-0 and mutant ube4 Arabidopsis thaliana plants
Activation of plant immunity is associated with dramatic transcriptome reprogramming to prioritise immune responses over normal cellular functions. Changes in gene expression are coordinated by the immune hormone salicylic acid (SA). Here we investigated the involvement of the E4 ubiquitin ligase UB...
ORGANISM(S): Arabidopsis thaliana 
2019-03-20 | E-MTAB-7369 | biostudies-arrayexpress
TranscriptomicsDevelopment of gene expression signatures for ANP in HUVEC
Analysis of HUVEC treated with ANP. ANP is a cardiac hormone, binding to the guanylate cyclase-A (GC-A) receptor with a major role in cardiovascular homeostatic mechanisms. Results provide insight into the molecular mechanisms of ANP in vascular endothelial cell. ANP induced gene expression in HUVEC...
ORGANISM(S): Homo sapiens 
2014-04-23 | E-GEOD-56976 | biostudies-arrayexpress
TranscriptomicsThe impact of BRCA2A and SSN2 on plant defense genes
BRCA2A: We used microarrays to identify differentially expressed genes. We focused on those genes that were dramatically salicylic acid-induced (>2-fold) and BRCA2A-dependent in npr1 sni1 double mutants. SSN2: We used microarrays to identify differentially expressed genes. We focused on those genes ...
ORGANISM(S): Arabidopsis thaliana 
2010-11-21 | E-GEOD-23617 | biostudies-arrayexpress
TranscriptomicsEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Background Next Generation Sequencing technologies have facilitated differential gene expression analysis through RNA-seq and Tag-seq methods. RNA-seq has biases associated with transcript lengths, lacks uniform coverage of regions in mRNA and requires 10–20 times more reads than a typical Tag-seq. ...
ORGANISM(S): Arabidopsis thaliana 
2014-06-20 | E-GEOD-51720 | biostudies-arrayexpress
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