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ProteomicsDeep motif deconvolution of HLA-II peptidomes
CD4 T cells are key for priming and regulating immune recognition of infected and cancer cells, but predictions of class II epitopes have limited accuracy. We profiled over 100’000 HLA-II ligands by Mass Spectrometry and developed a novel motif deconvolution algorithm to analyze these data. Our work...
ORGANISM(S): Homo sapiens (Human) 
2019-10-16 | PXD012308 | Pride
Immunopeptidomics Ligand predictions Mass spectrometry Hla class ii Neoantigens 
TranscriptomicsGametogenesis in an alternative hermaphrodite mollusk, the Pacific Oyster Crassostrea gigas: a microarray-based analysis identifies stage- and sex-specific genes
Background The Pacific oyster Crassostrea gigas (Mollusca, Lophotrochozoa) is an alternative and irregular protandrous hermaphrodite. Little is known about the genetic and phenotypic bases of sex determinism in oysters, and little more about the molecular pathways regulating reproduction. We have re...
ORGANISM(S): Crassostrea gigas 
2012-12-01 | E-GEOD-27955 | biostudies-arrayexpress
ProteomicsDeep motif deconvolution of HLA-II peptidomes
CD4 T cells are key for priming and regulating immune recognition of infected and cancer cells, but predictions of class II epitopes have limited accuracy. We profiled over 100’000 HLA-II ligands by Mass Spectrometry and developed a novel motif deconvolution algorithm to analyze these data. Our work...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-10-18 | MSV000096130 | MassIVE
UnknownTCR sequencing and cloning methods for repertoire analysis and isolation of tumor-reactive TCRs.
Not available
S-EPMC10163020 | biostudies-literature
UnknownActin filament oxidation by MICAL1 suppresses protections from cofilin-induced disassembly
Not available
S-SCDT-EMBOR-2020-50965V1 | biostudies-other
UnknownSensitive identification of neoantigens and cognate TCRs in human solid tumors.
Not available
S-EPMC9110298 | biostudies-literature
UnknownFGF19 and its analog Aldafermin cooperate with MYC to induce aggressive hepatocarcinogenesis
Not available
S-SCDT-10_1038-S44321-023-00021-X | biostudies-other
UnknownNeoantigen-specific CD8 T cells with high structural avidity preferentially reside in and eliminate tumors.
Not available
S-EPMC10244384 | biostudies-literature
UnknownEpidemiology of perioperative anaphylaxis in France in 2017-2018: the 11th GERAP survey.
Not available
S-EPMC11130666 | biostudies-literature
UnknownPerformance of Repeated Measures of (1-3)-β-D-Glucan, Mannan Antigen, and Antimannan Antibodies for the Diagnosis of Invasive Candidiasis in ICU Patients: A Preplanned Ancillary Analysis of the EMPIRICUS Randomized Clinical Trial.
Not available
S-EPMC8002176 | biostudies-literature
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