Haas R R - OmicsDI

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Unknown (1495)
Proteomics (79)
Transcriptomics (62)
Genomics (30)
Metabolomics (4)
Other (1)
Multiomics (1)

Organisms

Bombyx mori (70)
Onchocerca volvulus (70)
Klebsiella pneumoniae (70)
Musca domestica (70)
Brugia malayi (70)
Schizosaccharomyces pombe (70)
Streptomyces coelicolor A3(2) (70)
Sus scrofa (70)
Human immunodeficiency virus 1 (70)
Oryza sativa Indica Group (70)
Sinorhizobium meliloti BL225C (70)
Vitis (70)
Sus scrofa domesticus (70)
Ostreococcus tauri (70)
Saccharomyces cerevisiae (70)
Homo sapiens (57)
Mus musculus (20)
Aspergillus fumigatus (4)
Drosophila melanogaster (2)
Clostridioides difficile 630 (1)
Polypterus senegalus (1)
Methylocystis sp. SB2 (1)
Allium cepa (1)
Notophthalmus viridescens (1)
Ambystoma mexicanum (1)
Mytilus edulis (1)
Lolium perenne (1)
Pseudomonas aeruginosa PAO1 (1)
Corynebacterium glutamicum ATCC 13032 (1)
Rattus norvegicus (1)

Repository

pride (70)
biostudies-arrayexpress (65)
EGA (29)
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GPMDB (1)

Tissue

Cell culture (22)
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Colon cancer (5)
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Disease free (2)
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Immunoglobulin light chain amyloidosis (1)
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Technology Type

Mass Spectrometry (70)
Shotgun proteomics (42)
Affinity purification coupled with mass spectrometry proteomics (14)
Bottom-up proteomics (8)
Gel-based experiment (7)
Data-dependent acquisition (7)
Mass spectrometry (4)
Data-independent acquisition (4)
Top-down proteomics (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Orbitrap Fusion Lumos (4)
Illumina HiSeq 2000 (3)
Illumina HiSeq 2500 (2)
Orbitrap Fusion (2)
Q Exactive (2)
LTQ Orbitrap Discovery (Thermo Scientific) (2)
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TruSeq RNA Sample Preparation Kit (Illumina) (1)
Rneasy Plant Mini Kit (Qiagen) (1)
Illumina HiSeq 1500 (1)
NextSeq 500 (1)
Instrument (1)
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Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (19)
2022 (13)
2020 (13)
2024 (12)
2019 (11)
2023 (9)
2013 (9)
2014 (8)
2016 (7)
2025 (7)
2018 (7)
2011 (6)
2021 (6)
2026 (6)
2010 (5)
2009 (2)
2007 (2)
2012 (1)
2008 (1)
2005 (1)
2017 (1)

CHEBI ID

CHEBI:77065 (2)
CHEBI:16027 (2)
CHEBI:17596 (2)
CHEBI:21167 (1)
CHEBI:81175 (1)
CHEBI:219654 (1)
CHEBI:80074 (1)
CHEBI:6820 (1)
CHEBI:185794 (1)
CHEBI:74619 (1)
CHEBI:189976 (1)
CHEBI:28636 (1)
CHEBI:190269 (1)
CHEBI:57812 (1)
CHEBI:2494 (1)
CHEBI:18320 (1)
CHEBI:33117 (1)
CHEBI:16285 (1)
CHEBI:83498 (1)
CHEBI:89454 (1)
CHEBI:66869 (1)
CHEBI:90765 (1)
CHEBI:90483 (1)
CHEBI:134206 (1)
CHEBI:176437 (1)
CHEBI:134538 (1)
CHEBI:83063 (1)
CHEBI:174173 (1)
CHEBI:51340 (1)
CHEBI:81015 (1)

Metabolite Name

GDP-Hexose (1)
UDPAG (1)
Thymidylic acid (1)
Guanylate (1)
5'-adenylic acid (1)
Tetrocarcin A (1)
Uridine-diphosphate (1)
Cytidylic acid (1)
Akeboside Ste (1)
Cytidine diphosphate (1)
GDP-hexose (1)
Aclarubicin (1)
Aeruginopeptin 228A (1)
ADP-D-ribose (1)
2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone (1)
UDP-glucuronic acid (1)
Pristanate (1)
Phytanate (1)
Phenylalanylhydroxyproline* (1)
Lactobacillic acid (1)
Glucoheptose (1)
DTT (1)
Chlorthalidone (1)
Bromine (1)
2,2'-Methylenebis(6-tert-butyl-p-cresol) (1)
1-linoleoyl-GPA (18:2)* (1)
Bilirubin (1)
7-methylurate (1)
7-HOCA (1)
Glutathione oxidized (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (16)
RNA-seq of non coding RNA (5)
Other (3)
Proteomic profiling by array (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (175)
2024 (155)
2021 (149)
2023 (147)
2025 (138)
2020 (131)
2018 (85)
2015 (71)
2016 (69)
2019 (67)
2017 (63)
2014 (56)
2013 (53)
2011 (36)
2012 (35)
2010 (30)
2009 (24)
2026 (23)
2008 (14)
2007 (9)
2006 (6)
2005 (5)
2003 (5)
2000 (4)
2001 (3)
2004 (2)
2002 (2)
1999 (2)
1998 (1)

Lab affiliation

Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (9)
Immunopathology of Virus Infections Institute of Virology Technical University of Munich Munich, Germany (4)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (4)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (4)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (2)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (2)
Cambridge Institute for Medical Research, University of Cambridge, CB2 0XY, UK (1)
Proteomics Core Facility Biozentrum, University of Basel Spitalstrasse 41 CH - 4056 Basel Switzerland (1)
Dept. Cellular Molecular Pharmacology, University of San Francisco (UCSF), USA (1)
ZMBH, University Heidelberg Im Neuenheimer Feld 282 69120 Heidelbe4rg Germany (1)
Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France; University of Paris, Imagine Institute, Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA; Department of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France; Howard Hughes Medical Institute, New York, NY, USA (1)
Immunopathology of Virus Infections Laboratory, Institute of Virology, Technical University of Munich, Schneckenburgerstr. 8, D-81675 Munich, Germany (Lab head) (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Professor, Department of Molecular Biology and Biophysics Molecular Biology and Biophysics UConn Health 263 Farmington Avenue Farmington, CT 06030-3401 (1)
Helmholtz Diabetes Center (1)
Department of Molecular Hematology, Sanquin Research (1)
Genome Biology Unit, EMBL Heidelberg (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
3 Division of Molecular Genetics, Netherlands Cancer Institute, Amsterdam, The Netherlands (1)
Eberhard Karls University Tübingen Faculty of Science, Interfaculty Institute of Cell Biology Auf der Morgenstelle 15 72076 Tübingen Germany (1)
Laboratoire de Spectrométrie de Masse Bio-Organique Département des Sciences Analytiques, Institut Pluridisciplinaire Hubert Curien, UMR 7178 (CNRS-UdS) ECPM, Bat. R5-N0, 25 rue Becquerel F67087-Strasbourg-Cedex 2 (1)
Fred Hutch Cancer Center, Human Biology Division (1)
OncoProteomics Laboratory, Amsterdam UMC, The Netherlands (1)
Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin (1)
Anatomic Pathology, mayo clinic (1)
Mass Spectrometry for Biology Unit, CNRS USR2000, Institut Pasteur, CNRS, 28 rue du Dr Roux, 75015 Paris, France (1)
Experimental Neurology, University Hospital, Frankfurt am Main, Germany (1)
Helmholtz diabetes center (1)
Molecular Proteomics Laboratory, Biomedical Research Center (BMFZ), Heinrich-Heine-University, Düsseldorf, Germany (1)
ZMBH, University Heidelberg, Im Neuenheimer Feld 282, 69120 Heidelberg, Germany (1)

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The leukemia-specific fusion gene ETV6/RUNX1 perturbs distinct key biological functions primarily by gene repression

Background: ETV6/RUNX1 (E/R) (also known as TEL/AML1) is the most frequent gene fusion in childhood acute lymphoblastic leukemia (ALL) and also most likely the crucial factor for disease initiation, whereas its role in leukemia propagation and maintenance remains largely elusive. To address this iss...

ORGANISM(S): Homo sapiens

2011-11-01 | E-GEOD-29639 | biostudies-arrayexpress

Primary identification, biochemical characterization, and immunologic properties of the allergenic pollen cyclophilin cat R 1.

Not available

S-EPMC4118102 | biostudies-literature

Expression data for human retinal pigment epithelium (RPE)/choroid - early age-related macular degeneration (AMD) and control samples

Purpose: Age-related degeneration (AMD) is a major cause of blindness in developed countries. The molecular pathogenesis of early events in AMD is poorly understood. We investigated differential gene expression in samples of human retinal pigment epithelium (RPE)/choroid from early AMD and control m...

ORGANISM(S): Homo sapiens

2013-12-23 | E-GEOD-50195 | biostudies-arrayexpress

Disruption of stem cell niche-confined R-spondin 3 expression leads to impaired hematopoiesis.

Not available

S-EPMC9979769 | biostudies-literature

de Haas-van Alphen effect of correlated Dirac states in kagome metal Fe₃Sn₂.

Not available

S-EPMC6814717 | biostudies-literature

A red wine intervention does not modify plasma trimethylamine N-oxide but is associated with broad shifts in the plasma metabolome and gut microbiota composition

BACKGROUND: Gut microbiota profiles are closely related to cardiovascular diseases through mechanisms that include the reported deleterious effects of metabolites, such as trimethylamine N-oxide (TMAO), which have been studied as diagnostic and therapeutic targets. Moderate red ...

2024-05-09 | MTBLS310 | MetaboLights

High-Mobility Two-Dimensional Electron Gas at InGaN/InN Heterointerface Grown by Molecular Beam Epitaxy.

Not available

S-EPMC6145405 | biostudies-literature

Effect of Freeze-Thaw Cycles on the Oxidation of Protein and Fat and Its Relationship with the Formation of Heterocyclic Aromatic Amines and Advanced Glycation End Products in Raw Meat.

Not available

S-EPMC7956273 | biostudies-literature

The leukemia-specific fusion gene ETV6/RUNX1 perturbs distinct key biological functions primarily by gene repression.

Not available

S-EPMC3197637 | biostudies-literature

Haloacetic Acids and Haloacetamides Attack Distinct Cellular Proteome Thiols

Disinfection by-products (DBPs) exposure has been linked to multiple adverse health outcomes. However, the molecular initiating events by which DBPs induce their toxicities remains unclear. Herein we combined reporter cell lines and activity-based protein profiling (ABPP) chemical proteomics to iden...

ORGANISM(S): Homo sapiens (Human)

2020-11-11 | PXD018825 | Pride

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1671 Results

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BACKGROUND: Gut microbiota profiles are closely related to cardiovascular diseases through mechanisms that include the reported deleterious effects of metabolites, such as trimethylamine N-oxide (TMAO), which have been studied as diagnostic and therapeutic targets. Moderate red ...

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