Han B B - OmicsDI

Show results for

Unknown (14841)
Transcriptomics (617)
Proteomics (444)
Genomics (158)
Metabolomics (121)
Genomic (5)
Multiomics (4)
Models (3)
Other (2)

Organisms

Homo sapiens (366)
Mus musculus (242)
Rattus norvegicus (41)
Caenorhabditis elegans (32)
Arabidopsis thaliana (24)
Gallus gallus (12)
Zea mays (11)
Saccharomyces cerevisiae (9)
Danio rerio (8)
Oryza sativa (6)
Bos taurus (6)
Marmota monax (5)
Aspergillus niger (5)
Drosophila melanogaster (5)
Haloarcula hispanica (3)
Zea mays subsp. mays (3)
Macaca mulatta (3)
Populus trichocarpa (3)
Populus tremula x Populus alba (3)
Triticum aestivum (3)
Oryza sativa Japonica Group (3)
Dichelobacter nodosus (2)
Nannochloropsis oceanica (2)
Helicobacter pylori 26695 (2)
Schizophyllum commune (2)
Corynebacterium glutamicum (2)
Streptococcus suis (2)
Pseudomonas aeruginosa (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Coccinella septempunctata (1)

Organisms

Rattus norvegicus (5)
Homo sapiens (5)
Mus musculus (2)
Populus tremula x Populus alba (1)

Repository

biostudies-arrayexpress (690)
pride (322)
MetaboLights (120)
iProX (95)
EGA (66)
ENA (17)
MassIVE (10)
jPOST (8)
PeptideAtlas (7)
dbGaP (5)
geo (5)
BioModels (3)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (79)
Brain (39)
Epithelial cell (24)
Liver (13)
Cell suspension culture (12)
Embryo (11)
Heart (10)
Whole body (10)
Early embryonic cell (9)
Plant cell (8)
Blood (8)
Oocyte (7)
Lung (7)
Blood plasma (6)
Testis (6)
Kidney (6)
Mesenchymal cell (5)
Root (5)
Stem cell (5)
HeLa cell (5)
Fibroblast (5)
Others (4)
Embryonic stem cell (4)
Skin (4)
Blood serum (4)
Leaf (4)
B cell (4)
Blood cell (4)
Smooth muscle cell (3)
Brain (2)

Disease

Disease free (14)
Alzheimer's disease (8)
Breast cancer (7)
Cervix carcinoma (4)
Cardiovascular system disease (4)
Type 2 diabetes mellitus (4)
Colon cancer (4)
Acute leukemia (4)
Pancreatic cancer (3)
Brain disease (2)
COVID-19 (1)
Congestive heart failure (1)
Papillary renal cell carcinoma (1)
Ischemic (1)
Colorectal cancer recurrence-free (1)
Cardiac hypertrophy (1)
Normal (1)
Not Available (1)
Limb ischemia (1)
Obsessive-compulsive disorder (1)
Eosinophilic esophagitis (1)
Pancreatic carcinoma (1)
Neuromyelitis optica (1)
Myocarditis (1)
Cataract (1)
Exfoliation syndrome (1)
Kabuki syndrome (1)
Esophagus squamous cell carcinoma (1)
Prion disease (1)
Multiple sclerosis (1)

Technology Type

Mass Spectrometry (322)
Shotgun proteomics (175)
Mass spectrometry (86)
Bottom-up proteomics (62)
Data-dependent acquisition (36)
Affinity purification coupled with mass spectrometry proteomics (34)
Mass spectrometry assay (30)
Gel-based experiment (24)
Top-down proteomics (12)
Data-independent acquisition (9)
SWATH MS (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
NMR spectroscopy (4)
SRM/MRM (3)
Proteogenomics (2)
MSE (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
AB SOLiD System 3.0 (1)
Illumina Infinium 1.2M (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Unknown (1)
NMR spectroscopy assay (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
Illumina HiSeq 2000 (11)
Illumina HiSeq 2500 (10)
Illumina HiSeq 4000 (8)
Agilent 2100 Bioanalyzer (3)
Illumina Genome Analyzer (3)
Illumina NovaSeq X (3)
GeneChip Instrument System (2)
Affymetrix mouse gene 1.0 ST arrays (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
Illumina HiSeq 2000 platform (1)
KAPA RNA HyperPrep Kit (1)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
Agilent G2505B DNA microarray scanner (1)
Microbeads (1)
Ribo-Zero Gold (Illumina) (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Illumina HiScanSQ (1)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
RNeasy Mini Kit (1)
N/a (1)
DNBSEQ-T7 (1)
MinION (1)
HiSeq X Ten (1)

Publication Date

2014 (114)
2013 (98)
2015 (89)
2025 (87)
2011 (85)
2026 (75)
2022 (74)
2010 (73)
2024 (72)
2021 (71)
2012 (68)
2023 (57)
2019 (55)
2016 (53)
2018 (29)
2008 (29)
2020 (28)
2007 (22)
2009 (21)
2017 (18)
2006 (6)
2005 (1)
2004 (1)

UNIPROT ID/AC

Q9UMX5 (6)
Q9UIL1 (6)
Q9C005 (6)
Q9BZF1 (6)
Q9UBB4 (6)
Q9H2H8 (6)
Q9BTW9 (6)
Q9BRX8 (6)
Q9Y5L4 (6)
Q9UM22 (6)
Q9UIG0 (6)
Q9UI09 (6)
Q9UHB9 (6)
Q9UHA4 (6)
Q9P035 (6)
Q9UN86-2 (6)
Q9UN86 (6)
Q9UHQ9 (6)
Q99666 (6)
Q96TC7 (6)
Q96T76 (6)
Q96N66 (6)
Q96AQ6 (6)
Q92973 (6)
Q9NTJ5 (6)
Q93009 (6)
Q8WXF1 (6)
Q16798 (6)
P68036 (6)
P49069 (6)

ENSEMBL ID

ENSG00000170477 (6)
ENSG00000147251 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:30769 (32)
CHEBI:17368 (30)
CHEBI:16704 (29)
CHEBI:15741 (29)
CHEBI:7916 (27)
CHEBI:15756 (27)
CHEBI:17568 (26)
CHEBI:17596 (26)
CHEBI:16919 (26)
CHEBI:16828 (25)
CHEBI:16015 (25)
CHEBI:15891 (25)
CHEBI:15354 (25)
CHEBI:17895 (24)
CHEBI:16335 (24)
CHEBI:18012 (23)
CHEBI:32816 (23)
CHEBI:16737 (23)
CHEBI:17154 (23)
CHEBI:15971 (22)
CHEBI:17351 (21)
CHEBI:16414 (21)
CHEBI:17015 (21)
CHEBI:17203 (21)
CHEBI:15428 (21)
CHEBI:17295 (20)
CHEBI:16467 (20)
CHEBI:16359 (20)
CHEBI:16750 (20)
CHEBI:16027 (20)

Metabolite Name

Hypoxanthine (28)
Choline (28)
Uracil (26)
Uridine (25)
Creatinine (23)
Creatine (23)
Betaine (21)
Adenosine (21)
Cytosine (20)
Adenine (19)
Taurine (19)
Guanosine (19)
L-Histidine (18)
L-Proline (17)
L-Arginine (17)
Xanthine (17)
L-Tryptophan (16)
Guanine (16)
L-Carnitine (16)
Glycine (16)
L-Phenylalanine (16)
Inosine (16)
Thymine (15)
L-Tyrosine (15)
Indole (15)
Urocanic acid (15)
Sphinganine (15)
Salicylic acid (15)
Azelaic acid (15)
Uric acid (15)

First Public Date

2014 (6)
2023 (3)
2021 (3)
2026 (1)
2024 (1)
2022 (1)
2017 (1)
2016 (1)

Modelling Approach

Machine learning (1)
Population model (1)
Ordinary differential equation model (1)

Lab affiliation

St Jude Children's Research Hospital (8)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (4)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (4)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (3)
Hangzhou Medical College (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (3)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
Institute of Apicultural Research, Chinese Academy of Agricultural Sciences (3)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (3)
Department of Thoracic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650000, Yunnan, China. (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
lanzhou university (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (2)
Tianjin Medical University General Hospital (2)
Department of Biological Sciences, Vanderbilt University (2)
Mayo Clinic, Department of Oncology (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (2)
Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Southwest University (2)
China agricultural university, preventive veterinary medicine (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Gusu School, Nanjing Medical University (2)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (2)
The First Affiliated Hospital of Zhejiang University School of Medicine (2)
St jude Children's Research Hospital (2)

IsPrivate

False (3)

Submitter Keywords

Machine Learning Model (1)
COVID-19 (1)

Modification

2x(15)N labeled L-lysine (1)
4x(2)H labeled dimethylated L-lysine (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (381)
RNA-seq of coding RNA (110)
ChIP-seq (62)
Comparative genomic hybridization by array (26)
Methylation profiling by array (19)
RNA-seq of non coding RNA (19)
Other (14)
Methylation profiling by high throughput sequencing (12)
Unknown experiment type (8)
RNA-seq of coding RNA from single cells (6)
Genotyping by array (5)
Transcription profiling by RT-PCR (3)
Proteomic profiling by array (3)
RNA-seq of total RNA (3)
ChIP-chip by tiling array (2)
Cell line - One-color microarray (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
Transcription profiling by MPSS (1)
Baseline (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
RIP-seq (1)

Release Date

2025 (2012)
2022 (1956)
2023 (1714)
2024 (1576)
2021 (1560)
2020 (1173)
2019 (929)
2018 (769)
2017 (690)
2016 (586)
2015 (544)
2014 (479)
2013 (341)
2026 (278)
2012 (251)
2011 (220)
2010 (169)
2009 (94)
2008 (73)
2007 (45)
2006 (32)
2002 (10)
2004 (9)
2003 (9)
2005 (8)
2001 (2)
1999 (2)

Previous page
1 / 1620
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1620
Next page

Sort by:

Relevance

Page size

Transcription profiling of mouse follicular and marginal zone B-cells

Immature B cells in spleens of mouse and human differentiate into at least two subsets of mature B cells, the follicular (FO) B cells and the marginal zone (MZ) B cells, but functions, maturation and other properties of these cells are largely unknown. To solve these questions, in this study, we per...

ORGANISM(S): Mus musculus

2008-06-12 | E-GEOD-3599 | biostudies-arrayexpress

ABPP of Ibrutinib Resistance in B Cell Malignancies

Ibrutinib,a novel Bruton'styrosine kinase inhibitor, demonstrated high response rates in B-cell lymphomas but a growing number of ibrutinib treated patients relapse with resistance, fulminant progression and accelerated mortality. Using chemical proteomics and a high-throughput ex vivo assay in a re...

ORGANISM(S): Homo sapiens (Human)

2018-10-26 | PXD005734 | Pride

Transcriptomic analysis of the woodchuck model of chronic hepatitis B: Spleen gene expression in uninfected, resolved and chronically infected woodchucks

The Eastern woodchuck (Marmota monax) is naturally infected with woodchuck hepatitis virus (WHV), a hepadnavirus closely related to the human hepatitis B virus (HBV). The woodchuck is used as an animal model for studying chronic hepatitis B (CHB) and HBV-associated hepatocellular carcinoma (HCC) in ...

ORGANISM(S): Marmota monax

2012-04-10 | E-GEOD-36544 | biostudies-arrayexpress

Transcriptomic analysis of the woodchuck model of chronic hepatitis B: Kidney gene expression in uninfected, resolved and chronically infected woodchucks

ORGANISM(S): Marmota monax

2012-04-10 | E-GEOD-36541 | biostudies-arrayexpress

Mettl1-mediated B cell responses

Germinal center (GC) response requires increased protein synthesis. We identify the methyltransferase METTL1 as a translational checkpoint during GC responses. Therefore, we immunized mettl1-cko mice and control mice with NP-OVA, and sorted spleen B cells on day 14.

ORGANISM(S): Mus musculus (Mouse)

2024-11-01 | PXD057426 | Pride

Mice B cells Spleen

Large-scale viral genome analysis identifies novel clinical associations between hepatitis B virus and chronically infected patients

Despite the high global prevalence of chronic hepatitis B (CHB) infection, datasets covering the whole hepatitis B viral genome from large patient cohorts are lacking, greatly limiting our understanding of the viral genetic factors involved in this deadly disease. We performed deep sequencing of vir...

EGAS00001003689 | EGA

Transcriptomic analysis of the woodchuck model of chronic hepatitis B: Liver gene expression in uninfected, resolved and chronically infected woodchucks

ORGANISM(S): Marmota monax

2012-04-10 | E-GEOD-36533 | biostudies-arrayexpress

Transcriptomic analysis of the woodchuck model of chronic hepatitis B: Liver gene expression in tumor and non-tumor samples from chronically infected woodchucks

ORGANISM(S): Marmota monax

2012-04-10 | E-GEOD-36545 | biostudies-arrayexpress

Plasma Metabolome Analysis for Predicting Antiviral Treatment Efficacy in Chronic Hepatitis B: Diagnostic Biomarkers and Therapeutic Insights

The early and accurate identification of predictive biomarkers for antiviral treatment efficacy remains a significant clinical challenge, particularly in the management of chronic hepatitis B (CHB). This study aimed to assess whether the plasma metabolome could reliably predict the success of antivi...

2024-07-10 | MTBLS10401 | MetaboLights

Small tRNA-derived RNAs are increased and more abundant than microRNAs in chronic hepatitis B and C

Small, non-coding RNAs control gene expression post-transcriptionally and play important roles in virus-host interactions. Within the liver, the microRNA (miRNA) miR-122 is essential for replication of hepatitis C virus (HCV), while repression of miR-148a by hepatitis B virus (HBV) may enhance tumor...

ORGANISM(S): Homo sapiens

2014-12-18 | E-GEOD-57381 | biostudies-arrayexpress

Previous page
1 / 1620
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1620
Next page

Sort by:

Relevance

Page size

16191 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Submitter Keywords

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets