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TranscriptomicspcaGoPromoter - An R package for functional interpretation of principal component analysis of genome-wide gene expression data
Background and aim: Analysis of data obtained from genome wide gene expression experiments is challenging, due to the huge amount of variables, management of the data and the need for multivariate analysis. We here present the R package: pcaGoPromoter that facilitates the interpretation of genome wi...
ORGANISM(S): Homo sapiens 
2011-05-01 | E-GEOD-27071 | biostudies-arrayexpress
TranscriptomicsRNAi knock down of RNA binding IMP proteins in human epithelial (HeLa) cells
To identify factors and pathways regulated by IMP proteins and obtain leads to the mechanism behind the phenotypic changes, we compared the gene expression profiles of IMP siRNA treated cells with mock treated cells. Triplicate gene expression profiles were generated from both the IMP(1,3)A and IMP(...
ORGANISM(S): Homo sapiens 
2006-09-30 | E-MEXP-548 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of migratory vs sedentary brown trout (Salmo trutta) and wild vs hatchery Atlantic salmon (Salmo salar)
A total of 55 individuals were analysed: 15 migratory brown trout (Salmo trutta) individuals from the Redon river, 15 sedentary brown trout (S. trutta) individuals from the Redon river, 15 sedentary brown trout (S. trutta) individuals from the Chevenne river, and 10 Atlantic salmon (S. salar) indivi...
ORGANISM(S): Salmo salar 
2006-03-27 | E-MEXP-123 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation
Response of Saccharomyces cerevisiae to Ammonium, L-alanine, or L-glutamine Limitation. The protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rate (D) of 0.20 per hour (in triplicate for each nitrogen limited condition...
ORGANISM(S): Saccharomyces cerevisiae 
2006-06-13 | E-MEXP-724 | biostudies-arrayexpress
TranscriptomicsValidation of a laboratory assay for prediction of relapse in stage I non-small cell lung cancer (NSCLC) using miRNA profiling of formalin-fixed paraffin-embedded (FFPE) tissue specimens.
Technical validation of miRNA assay for prediction of relapse in NSCLC.
ORGANISM(S): Homo sapiens 
2011-10-28 | E-MTAB-618 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast grown in fermentors at different dilution rates
the protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rates of 0.02, 0.05, 0.10 (in triplicate), 0.20 (in triplicate), 0.25, and 0.33 per hour (in triplicate). At steady state, samples from each of the 12 continuous cu...
ORGANISM(S): Saccharomyces cerevisiae 
2022-11-21 | E-MEXP-593 | biostudies-arrayexpress
TranscriptomicsTrained and untrained human skeletal muscle single-nucleus RNA-sequencing from individuals with type 2 diabetes and control
Single-nuclei RNA sequencing (snRNA-seq) data of human muscle cells. The samples are a part of a study investigating the effect of one-legged high-intensity interval training (HIIT) on the nuclear transcriptional response in skeletal muscle. The HIIT was done on one leg on a cycle ergometer, and vas...
ORGANISM(S): Homo sapiens 
2025-04-24 | E-MTAB-15009 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of human HEK293 cells with flag-tagged IMP1 antibody
Isolation of IMP1 bound mRNAs. Flag-tagged IMP1 was expressed in HEK293 cells. Flag tagged IMP1 was immunoprecipitated and mRNAs isolated. As controls HEK293 cells that do not express Flag-tagged IMP1 was included.
ORGANISM(S): Homo sapiens 
2006-12-31 | E-MEXP-841 | biostudies-arrayexpress
TranscriptomicsPregnancy-associated genes contribute to antiluteolytic mechanisms in ovine coprus luteum
Ovine interferon-tau (IFNT) is released from the conceptus by Day 12 of pregnancy and disrupts pulsatile release of endometrial prostaglandin F2 alpha (PGF), thereby protecting the corpus luteum (CL). IFNT may also have endocrine action through inducing interferon stimulated genes (ISGs) in the CL. ...
ORGANISM(S): Ovis aries 
2013-11-01 | E-GEOD-47776 | biostudies-arrayexpress
TranscriptomicsExpression profile of miR-101 transfection in MCF-7 cells compared with scramble control
Autophagy is an evolutionarily conserved mechanism of cellular self-digestion in which proteins and organelles are degraded through delivery to lysosomes. Defects in this process are implicated in numerous human diseases including cancer. To further elucidate regulatory mechanisms of autophagy, we p...
ORGANISM(S): Homo sapiens 
2011-08-19 | E-GEOD-31397 | biostudies-arrayexpress
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