Hare - OmicsDI

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Unknown (1224)
Transcriptomics (98)
Genomics (96)
Proteomics (51)
Metabolomics (9)
Other (1)

Organisms

Oryctolagus cuniculus (31)
Homo sapiens (28)
Mus musculus (24)
Drosophila melanogaster (12)
Andropogon gerardi (11)
Bacteria (11)
Canis lupus familiaris (11)
Aplysia californica (8)
Rattus norvegicus (7)
Zea mays (4)
Vibrio cholerae (3)
Sus scrofa (3)
Arabidopsis thaliana (3)
Anopheles gambiae (2)
Bos taurus (2)
Cryptococcus neoformans (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Danio rerio (2)
Schistosoma japonicum (1)
Leishmania major (1)
Loxodonta africana (1)
Xenopus tropicalis (1)
Bacillus subtilis (1)
Staphylococcus aureus (1)
Streptococcus pneumoniae (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Candida albicans (1)
Oryctolagus cuniculus cuniculus (1)
Plasmodium falciparum 3D7 (1)

Organisms

Pedetes capensis (4)
Aplysia californica (4)
Treponema paraluiscuniculi (3)
Lepus americanus (3)
Lepus europaeus (2)
Lepus timidus (2)
Yersinia kristensenii 490 (1)
Lepus granatensis (1)
Myxoma virus (1)
Francisella tularensis subsp. holarctica (1)
Brachyelytrum erectum (1)
Chryseobacterium proteolyticum (1)
Lepus capensis (1)
rabbit gut metagenome (1)
Metatheria (1)
Oryctolagus cuniculus (1)
gill metagenome (1)

Repository

biostudies-arrayexpress (126)
ENA (61)
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pride (11)
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geo (2)
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Tissue

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Liver (1)
Macrophage (1)
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Spleen (1)

Disease

Normal (5)
NTN (1)
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Tularemia (1)

Technology Type

Mass Spectrometry (11)
Mass spectrometry (5)
Shotgun proteomics (5)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Illumina HiSeq 2000 (1)
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Instrument Platform

Orbitrap Fusion Lumos (9)
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Illumina NovaSeq 6000 (7)
Illumina NovaSeq X (6)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (4)
NextSeq 2000 (3)
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NextSeq 550 (2)
Illumina HiSeq 4000 (2)
Q Exactive (2)
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SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
Nanodrop 2000c spectrophotometer (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
Genetix aQuire (1)
None (1)
Not applicable (1)
GenePix 4000B [Axon Instruments] (1)
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Publication Date

2010 (19)
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2014 (12)
2012 (12)
2015 (11)
2013 (11)
2011 (11)
2016 (10)
2019 (8)
2021 (6)
2020 (6)
2023 (5)
2017 (5)
2009 (4)
2018 (3)
2008 (3)
2007 (3)
2006 (2)
2004 (1)

UNIPROT ID/AC

1433T_RABIT (1)
2A5B_RABIT (1)
2A5D_RABIT (1)
2A5E_RABIT (1)
2A5G_RABIT (1)
2ABA_RABIT (1)
2ABB_RABIT (1)
3HIDH_RABIT (1)
4F2_RABIT (1)
9986.ENSOCUP00000000042 (1)
9986.ENSOCUP00000000055 (1)
9986.ENSOCUP00000000070 (1)
9986.ENSOCUP00000000109 (1)
9986.ENSOCUP00000000131 (1)
9986.ENSOCUP00000000206 (1)
9986.ENSOCUP00000000207 (1)
9986.ENSOCUP00000000305 (1)
9986.ENSOCUP00000000435 (1)
9986.ENSOCUP00000000441 (1)
9986.ENSOCUP00000000514 (1)
9986.ENSOCUP00000000533 (1)
9986.ENSOCUP00000000568 (1)
9986.ENSOCUP00000000651 (1)
9986.ENSOCUP00000000725 (1)
9986.ENSOCUP00000000758 (1)
9986.ENSOCUP00000000909 (1)
9986.ENSOCUP00000000919 (1)
9986.ENSOCUP00000000954 (1)
9986.ENSOCUP00000001052 (1)
9986.ENSOCUP00000001101 (1)

CHEBI ID

CHEBI:46961 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:17268 (3)
CHEBI:1148 (3)
CHEBI:17750 (3)
CHEBI:16704 (3)
CHEBI:15366 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:15354 (3)
CHEBI:17295 (3)
CHEBI:17712 (3)
CHEBI:16828 (3)
CHEBI:17368 (3)
CHEBI:16964 (2)
CHEBI:28918 (2)
CHEBI:28315 (2)
CHEBI:16294 (2)
CHEBI:17587 (2)
CHEBI:30860 (2)
CHEBI:28125 (2)
CHEBI:741548 (2)
CHEBI:69438 (2)
CHEBI:2030 (2)
CHEBI:16974 (2)
CHEBI:16765 (2)
CHEBI:18202 (2)
CHEBI:40410 (2)
CHEBI:17992 (2)

Metabolite Name

9H-xanthine (2)
Phytosphingosine (2)
Corticosterone (2)
L-tryptophan (2)
L-phenylalanine (2)
L-kynurenine (2)
Ornithine (2)
Uridine (2)
Hypoxanthine (2)
Cresol (1)
3-oxodecanoic acid (1)
Cyclooctanemethanol (1)
(E)-2-Decenal (1)
Dodecane, 4-methyl- (1)
4-[pyrrolidin-2-one-5-yl]-Butan-2-one (1)
2-Decenal, (Z)- (1)
2-Pentoxy-tetrahydropyran (1)
2'-methyl-Propiophenone (1)
N-ethyl-2-Furancarboxamide (1)
Nonane, 5-methyl-5-propyl- (1)
Decane, 3-ethyl-3-methyl- (1)
Trans-3(10)-Caren-2-ol (1)
(E)-3-Dodecene (1)
2,8-dimethyl-Undecane (1)
Cis-7-Decen-1-al (1)
BenzAldehyde, 2,4-dimethyl- (1)
Pyrazine, 2-methoxy-3-(2-methylpropyl)- (1)
2-hydroxy-BenzAldehyde (1)
6-Nonenoic acid, methyl ester (1)
1-pentyl-Cyclohexene (1)

First Public Date

2025 (11)
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2024 (8)
2021 (6)
2022 (5)
2020 (4)
2023 (3)
2019 (3)
2018 (3)
2017 (3)
2013 (3)
2016 (1)
2015 (1)
2014 (1)

Classification

bacteria (5)
viruses (1)

Modification

Not available (1)

Study type

Transcription profiling by array (48)
ChIP-seq (26)
RNA-seq of coding RNA (13)
ChIP-chip by array (10)
Other (3)
CUT&RUN (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Antigen profiling (1)
Spatial transcriptomics by high-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
DNA-seq (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (131)
2022 (127)
2020 (117)
2023 (113)
2025 (102)
2024 (102)
2019 (102)
2018 (80)
2017 (76)
2015 (64)
2014 (57)
2016 (52)
2012 (42)
2010 (35)
2013 (32)
2011 (32)
2026 (21)
2009 (18)
2008 (15)
2007 (10)
2006 (6)
2005 (5)
2004 (4)
2002 (2)
2000 (2)
1999 (2)
2001 (1)

Lab affiliation

University of Edinburgh (2)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)
Cedars-Sinai Heart Institute (1)
Chemistry of Michigan State University (1)
Department of Pediatrics (1)
Department of Stem Cell Medicine, Murdoch Children's Research Institute, Victoria, Australia (1)
Ipatimup / i3S, Porto, Portugal (1)
Johns Hopkins University (1)
Max Planck Institute for Molecular Genetics, Mass Spectrometry Facility (1)
Tuberculosis Research Program, Centenary Institute, Sydney, NSW, Australia; School of Medical Sciences, The University of Sydney, NSW, Australia (1)

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Hepatitis C-like viruses are produced in cells from rabbit and hare DNA

Hepatitis C virus (HCV), a major causative agent of acute and chronic liver disease, belongs to the Flaviviridæ family and contains a single-strand positive-sense RNA genome, which upon virus entry and uncoating, functions as mRNAs and thus can be directly translated into proteins by host cell machi...

ORGANISM(S): Hepatitis C virus

2016-01-21 | PXD001992 | Pride

A developmental atlas of transcription in the sea hare Aplysia californica

The monitoring of global transcription patterns during development is a useful first step to understand mechanisms underlying growth, differentiation and patterning in a given species. However such large scale developmental studies are so far only available from a few selected model organisms such a...

ORGANISM(S): Aplysia californica

2010-10-04 | E-GEOD-14941 | biostudies-arrayexpress

Rapid and culture free identification of Francisella in hare carcasses by high-resolution mass spectrometry

Zoonotic pathogens that can be transmitted via food to humans have a high potential for large-scale emergencies, comprising severe effects on public health, critical infrastructures, and the economy. In this context, the development of laboratory methods to rapidly detect zoonotic bacteria in the fo...

ORGANISM(S): Francisella hispaniensis Francisella tularensis subsp. holarctica Francisella tularensis subsp. mediasiatica Francisella tularensis subsp. tularensis Lepus europaeus Francisella tularensis subsp. novicida Francisella philomiragia

2020-06-30 | PXD013979 | Pride

Proteome profiling Detection of pathogens High-resolution mass spectrometry Phylogenetic analysis Francisella tularensis

Tissue-specific splice variants of HARE/Stabilin-2 are expressed in bone marrow, lymph node, and spleen.

Not available

S-EPMC4276495 | biostudies-literature

Widespread introgression of mountain hare genes into Fennoscandian brown hare populations.

Not available

S-EPMC5784980 | biostudies-literature

Mountain- and brown hare genetic polymorphisms to survey local adaptations and conservation status of the heath hare (Lepus timidus sylvaticus, Nilsson 1831).

Not available

S-EPMC9633808 | biostudies-literature

An Annotated Draft Genome of the Mountain Hare (Lepus timidus).