Rabbit - OmicsDI

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Unknown (6227)
Genomics (1375)
Transcriptomics (811)
Proteomics (648)
Models (24)
Metabolomics (24)
Other (18)
Genomic (1)

Organisms

Homo sapiens (381)
Mus musculus (342)
Oryctolagus cuniculus (203)
Drosophila melanogaster (73)
Saccharomyces cerevisiae (39)
Rattus norvegicus (25)
Caenorhabditis elegans (18)
Arabidopsis thaliana (16)
Vibrio cholerae (13)
Francisella tularensis (12)
Bos taurus (12)
Ovis aries (9)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (7)
Sus scrofa (7)
Schizosaccharomyces pombe (6)
Macaca fascicularis (6)
Cryptococcus neoformans (6)
Escherichia coli (5)
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Streptomyces venezuelae (4)
Salmonella enterica subsp. enterica serovar Typhimurium (4)
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Klebsiella pneumoniae (4)
Canis lupus familiaris (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Geobacter sulfurreducens PCA (3)
Bordetella bronchiseptica (3)
Oryctolagus (1)

Organisms

Oryctolagus cuniculus (185)
Homo sapiens (146)
Mus musculus (132)
gut metagenome (22)
rabbit gut metagenome (13)
Saccharomyces cerevisiae (10)
Arabidopsis thaliana (10)
Drosophila melanogaster (9)
feces metagenome (8)
Rattus norvegicus (7)
Vibrio cholerae (6)
Bos taurus (6)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (5)
Mycoplasma mycoides subsp. mycoides (5)
Klebsiella pneumoniae (5)
Treponema paraluiscuniculi (4)
Leporidae (4)
Oryctolagus cuniculus cuniculus (4)
Plasmodium falciparum (4)
Caenorhabditis elegans (4)
Pasteurella multocida (4)
Staphylococcus aureus (4)
Cryptococcus neoformans (3)
Danio rerio (3)
Rabbit hemorrhagic disease virus (2)
Sylvilagus floridanus (2)
Ixodes ricinus (2)
Pseudomonas aeruginosa (2)
metagenome (2)
Salmonella enterica subsp. enterica serovar Enteritidis (2)

Repository

ENA (1005)
biostudies-arrayexpress (963)
pride (489)
geo (248)
MassIVE (88)
iProX (30)
BioModels (20)
jPOST (19)
MetaboLights (18)
GNPS (5)
PMR (4)
EVA (3)
NODE (3)
PanoramaPublic (3)
EGA (2)
ExpressionAtlas (1)
dbGaP (1)
MetabolomicsWorkbench (1)
PAXDB (1)

Tissue

Cell culture (112)
Brain (31)
Epithelial cell (28)
Liver (24)
T cell (18)
Permanent cell line cell (14)
Fibroblast (11)
Primary cell (11)
Testis (10)
Plant cell (10)
Spleen (10)
Heart (9)
Embryonic stem cell (9)
Blood serum (9)
Blood (9)
Kidney (8)
Sperm (8)
Lymph node (8)
Leaf (7)
Hepatocyte (7)
B cell (7)
Skeletal muscle (6)
Whole body (6)
Lung (6)
Colon (6)
Ovary (3)
Cell line (2)
Forebrain (1)
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Blood (1)

Disease

Disease free (14)
Normal (8)
Breast cancer (8)
Colon cancer (6)
Infertility (5)
Acute leukemia (5)
Neuroblastoma (4)
Lung cancer (4)
Cardiovascular system disease (4)
Parkinson's disease (4)
Malignant neoplasm of ovary (4)
Ciliopathy (3)
Non-small cell lung carcinoma (3)
Membranous glomerulonephritis (3)
Lymphoma (3)
Cervix carcinoma (3)
Pancreatic cancer (3)
Crohn's disease (3)
Chronic myeloid leukemia (2)
Hepatocellular carcinoma (2)
Male infertility (2)
Histoplasmosis (2)
Multibacillary (1)
NTN (1)
Infected (1)
Non-infected (1)
Psoroptes ovis infestation (1)
Carcinoma (1)
Breast carcinoma (1)
Mantle cell lymphoma (1)

Technology Type

Mass Spectrometry (490)
Shotgun proteomics (218)
Affinity purification coupled with mass spectrometry proteomics (147)
Bottom-up proteomics (71)
Gel-based experiment (55)
Data-dependent acquisition (44)
Chemical cross-linking coupled with mass spectrometry proteomics (20)
Data-independent acquisition (18)
HDMSE (14)
Mass spectrometry (13)
SWATH MS (11)
Top-down proteomics (10)
Affinity proteomics (4)
SRM/MRM (4)
NMR spectroscopy (3)
Mass spectrometry assay (2)
Proteogenomics (2)
Immunopeptidomics (2)
MSE (2)
All-ion fragmentation (2)
DiaPASEF (2)
ESI (1)

Instrument Platform

Illumina HiSeq 2500 (36)
Illumina HiSeq 4000 (32)
Illumina HiSeq 2000 (29)
NextSeq 500 (23)
Illumina NovaSeq 6000 (18)
Illumina MiSeq (12)
NextSeq 550 (9)
Illumina Genome Analyzer IIx (6)
Illumina HiSeq 1500 (5)
NextSeq 2000 (4)
GenePix 4000B [Axon Instruments] (3)
Illumina NovaSeq X (3)
AB 5500 Genetic Analyzer (2)
G2565AA DNA microarray scanner [Agilent] (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 1000 (2)
SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
Nanodrop 2000c spectrophotometer (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
DNA 7500 Bioanalyzer Chips (1)
Dell PowerEdge 630 with Intel Xeon E5-2630 processor (8 cores 16 threads) and 94 GB memory running CentOS Linux release 7.5.1804. (1)
Tapestation (1)
Genetix aQuire (1)
MGISEQ-2000 (1)
None (1)

Publication Date

2022 (140)
2013 (138)
2014 (133)
2015 (132)
2023 (121)
2010 (117)
2012 (108)
2020 (100)
2016 (99)
2026 (94)
2025 (93)
2024 (93)
2021 (93)
2019 (92)
2011 (79)
2018 (65)
2017 (54)
2008 (38)
2009 (33)
2005 (19)
2007 (16)
2006 (12)
2004 (3)

UNIPROT ID/AC

G1SVB3_RABIT (1)
A0A5F9C4L7_RABIT (1)
G1TKE5_RABIT (1)
G1T4D5_RABIT (1)
G1U8G0_RABIT (1)
G1SSN8_RABIT (1)
G1T4N8_RABIT (1)
G1SMH9_RABIT (1)
G1U2A1_RABIT (1)
G1U3Q6_RABIT (1)
A0A5F9CGP0_RABIT (1)
SAA2_RABIT (1)
G1T2S0_RABIT (1)
G1TDT3_RABIT (1)
CPNS1_RABIT (1)
G1T8H5_RABIT (1)
G1TL08_RABIT (1)
G1SZP6_RABIT (1)
A0A5F9CNA2_RABIT (1)
G1TKV1_RABIT (1)
G1TSW8_RABIT (1)
U3KM54_RABIT (1)
G1SDU8_RABIT (1)
G1SJQ2_RABIT (1)
A0A5F9D7S5_RABIT (1)
G1TEP2_RABIT (1)
G1U207_RABIT (1)
G1SPW1_RABIT (1)
G1SN00_RABIT (1)
G1TN29_RABIT (1)

CHEBI ID

CHEBI:16919 (8)
CHEBI:15354 (7)
CHEBI:16737 (7)
CHEBI:17368 (7)
CHEBI:17268 (6)
CHEBI:17750 (6)
CHEBI:16704 (6)
CHEBI:15428 (6)
CHEBI:15741 (6)
CHEBI:15366 (5)
CHEBI:17712 (5)
CHEBI:16828 (5)
CHEBI:17295 (5)
CHEBI:15891 (5)
CHEBI:18132 (5)
CHEBI:30769 (5)
CHEBI:20067 (5)
CHEBI:1148 (5)
CHEBI:16856 (5)
CHEBI:32816 (5)
CHEBI:18135 (4)
CHEBI:35932 (4)
CHEBI:16997 (4)
CHEBI:30746 (4)
CHEBI:17895 (4)
CHEBI:16010 (4)
CHEBI:17287 (1)
CHEBI:18367 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)

Metabolite Name

Hypoxanthine (6)
Ornithine (4)
Creatinine (4)
Creatine (4)
Uridine (4)
Ketoleucine (3)
Betaine (3)
Tryptophan (3)
Glycine (3)
L-Histidine (3)
Choline (3)
L-Phenylalanine (3)
Inosine (3)
Glycine betaine (2)
4-Acetamidobutanoate (2)
Deoxycholic acid (2)
Chenodeoxycholic acid (2)
Cholic acid (2)
L-kynurenine (2)
1,2,4-Trimethoxybenzene (2)
Isobutyrate (2)
9H-xanthine (2)
Phytosphingosine (2)
Tridecane (2)
Benzoate (2)
Trolox (2)
L-Citrulline (2)
Pyroglutamate (2)
Corticosterone (2)
Formate (2)

First Public Date

2025 (125)
2023 (108)
2014 (103)
2024 (102)
2026 (100)
2022 (98)
2021 (71)
2020 (68)
2019 (64)
2018 (41)
2017 (38)
2013 (32)
2015 (28)
2016 (27)

Modelling Approach

Ordinary differential equation model (19)
Differential algebraic equation model (1)

Lab affiliation

Head of the Curie Institute Mass Spectrometry Platform (7)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (4)
University of Edinburgh (4)
Whitehead Institute and MIT (3)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls-University Tuebingen (3)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (3)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (3)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Professor Institutt for kreftforskning og molekylær medisin Erling Skjalgssons g 1, Laboratoriesenteret * 231.05.036 Trondheim 7030, Norway (3)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
Department of Plant Physiology, University of Rostock, Germany (2)
ESALQ (2)
Department of Molecular and Translational Oncology, Maria Sklodowska-Curie Memorial Cancer Center and Institute of Oncology; Warsaw, Poland (2)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (2)
University of Cologne (2)
Instituto de Ciencia y Tecnología Animal, Universidad Politècnica de València, Valencia, Spain (2)
Universität Heidelberg Medizinische Fakultät Im Neuenheimer Feld 307 69120 Heidelberg (2)
Prof. Dr. M. Waheed Akhtar, School of Biological Sciences, University of the Punjab, Lahore, Pakistan (2)
Director of the Robert H. Lurie Comprehensive Cancer Center of Northwestern University and the Jesse, Sara, Andrew, Abigail, Benjamin and Elizabeth Lurie Professor of Oncology in the Departments of Medicine and Biochemistry and Molecular Genetics. (2)
Imperial College, Medicine, Level 3 Sherfield Building, Exhibition Road, SW7 2AZ London (2)
ESALQ-USP (2)
Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekio 7, Vilnius, LT-10257, Lithuania (2)
Zhejiang Academy of Agricultural Sciences (2)
Debora Bonenfant, Novartis Institutes for BioMedical Research, Basel, Switzerland (2)
Molecular Physiology & Biophysics, Wright Lab, University of Iowa, USA (2)
KU Leuven - Department of Oncology - Laboratory for Disease Mechanisms in Cancer (2)
Mayo Clinic (2)
University of Houston, Houston, TX 77204 (2)

IsPrivate

False (20)

Classification

bacteria (60)
viruses (7)
fungi (6)
protozoa (6)

Modification

4-tetrahydrothiazine-3-carboxylic acid (3)
57.021464 (2)
56.026215 (1)
79.966331 (1)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)

Study type

ChIP-seq (300)
Transcription profiling by array (197)
ChIP-chip by tiling array (122)
RNA-seq of coding RNA (99)
ChIP-chip by array (68)
Proteomic profiling by array (23)
RNA-seq of non coding RNA (19)
Methylation profiling by high throughput sequencing (18)
Other (15)
CUT&RUN (11)
RIP-seq (10)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA from single cells (8)
Unknown experiment type (7)
Cell line - High-throughput sequencing (7)
CLIP-seq (7)
Animal - High-throughput sequencing (6)
Transcription profiling by tiling array (5)
Methylation profiling by array (5)
Human - High-throughput sequencing (3)
DNA-seq (3)
High-throughput sequencing (2)
Genotyping by array (2)
Antigen profiling (2)
RNA-seq of total RNA (2)
RIP-chip by array (1)
Animal - One-color microarray (1)
CLIP-Seq (1)
Animal - Single-cell sequencing (1)
Translation profiling (1)

Release Date

2022 (598)
2021 (586)
2023 (562)
2020 (514)
2025 (473)
2024 (431)
2018 (403)
2019 (393)
2015 (391)
2016 (357)
2014 (337)
2017 (330)
2013 (318)
2012 (266)
2010 (239)
2011 (230)
2009 (122)
2008 (121)
2026 (97)
2007 (61)
2006 (61)
2005 (53)
1999 (40)
2004 (35)
2000 (31)
2002 (30)
2003 (28)
2001 (28)
1998 (28)
1997 (12)

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Post-mortem changes in the metabolomic compositions of rabbit blood, aqueous and vitreous humors

Introduction: The analysis of post-mortem metabolomic changes in biological fluids opens the way to develop new methods for the estimation of post-mortem interval (PMI). It may also help in the analysis of disease-induced metabolomic changes in human tissues when the postoperational samples are comp...

2017-08-23 | MTBLS349 | MetaboLights

Gene Expression Profiles in a Rabbit Model of Systemic Lupus Erythematosus

We previously reported the establishment of a rabbit (Oryctolagus cuniculus) model of Systemic Lupus Erythematosus (SLE) in which peptide immunization led to lupus-like autoantibody production including anti-Sm, -RNP, -SS-A, -SS-B and -dsDNA. Some neurological symptoms in form of seizures and nystag...

ORGANISM(S): Oryctolagus cuniculus

2010-07-23 | E-GEOD-23076 | biostudies-arrayexpress

Delineating molecular regulatory network of meat quality of longissimus dorsi indicated by transcriptomic, proteomic, and metabolomics analysis in rabbit (UPLC-MS/MS assays)

This study aims to investigate the potential regulatory network responsible for the meat quality using multi-omics to help developing better varieties. Slaughter performance and meat quality of Shuxing No.1 rabbit outperformed Yila rabbit. Differentially expressed genes (DEGs) and differentially ...

2024-01-18 | MTBLS8957 | MetaboLights

Delineating molecular regulatory network of meat quality of longissimus dorsi indicated by transcriptomic, proteomic, and metabolomics analysis in rabbit (SPME-GC-MS assay)

2024-01-18 | MTBLS8958 | MetaboLights

Integrated Proteomics and Metabolomics Analyses Revealed Potential Phospholipid-Related Biomarkers in Rabbit Atherosclerotic Plaques

BACKGROUND AND AIMS: Atherosclerosis, characterized by dysfunction of lipid metabolism and chronic inflammation, is considered as a metabolic disorder as well as a major contributor to cardiovascular diseases. However, metabolic signatures of atherosclerosis have not been well ex...

2024-09-26 | MTBLS9737 | MetaboLights

Rabbit plasma metabolomic analysis of Nitroproston: a multi target natural prostaglandin based-drug (Untargeted study)

INTRODUCTION: Nitroproston® is a novel multi-target drug bearing natural prostaglandin E2 (PGE2) and nitric oxide (NO)-donating fragments for treatment of inflammatory and obstructive diseases (i.e. asthma and obstructive bronchitis). OBJECTIVES: To investigate the effects of Nitroproston® adm...

2019-08-27 | MTBLS727 | MetaboLights

Rabbit Plasma Lipidomics with high fat diet and treatment

Not available

ORGANISM(S): Oryctolagus cuniculus

ST000781 | MetabolomicsWorkbench

PDE-4 inhibition alters gene expression and improves INH-mediated clearance of Mtb in rabbit lungs

Tuberculosis kills nearly 2 million people through out the world, every year. The outcome of M. tuberculosis infection is determined by the host and bacterial factors. A strong host immune response controls the growth of the bacilli effectively. However, in a host with suboptimal immune response,...

ORGANISM(S): Oryctolagus cuniculus

2011-03-16 | E-GEOD-27992 | biostudies-arrayexpress

In vivo rabbit preimplantation development

Evaluation of the transcriptomic profile of the rabbit embryo along the preimplantation period during in vivo development. Three embryonic stages were used: four cell embryos (H32 post-coïtum); morula (H58 pc) and blastocyst (H90 pc). Keywords: time course rabbit embryo 18 samples

ORGANISM(S): Oryctolagus cuniculus

2008-11-30 | E-GEOD-12084 | biostudies-arrayexpress

Proteomic profiling of various rabbit eye tissues

Rabbits have been widely used for studying ocular physiology and pathology due to their relatively large eye size and similar structures with human eyes. Various rabbit ocular disease models, such as dry eye, age-related macular degeneration, and glaucoma, have been established. Despite the growing ...

ORGANISM(S): Oryctolagus cuniculus (Rabbit)

2022-02-21 | PXD031194 | Pride

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