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TranscriptomicsTranscription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions
Null mutations in the SAL1 protein, a bi-functional protein with inositol polyphosphate-1-phosphotase activity and nucleosidase activity, result in mutants with altered leaf morphology, delayed growth and tolerance to drought stress. This experiment examines the gene expression of two SAL1 mutants, ...
ORGANISM(S): Arabidopsis thaliana 
2009-02-27 | E-MEXP-1495 | biostudies-arrayexpress
ProteomicsMapping the Triticum aestivum proteome
Wheat is the staple food of over 35% of the world’s population, accounts for 20% of all human calories, and its yield and quality improvement is a focus in the effort to meet new demands from population growth and changing diets. As the complexity of the wheat genome is unravelled, determining how i...
ORGANISM(S): Triticum aestivum (Wheat) 
2016-11-17 | PXD004720 | Pride
Proteomics Lcms Proteome Database Triticum aestivum Spectral counting Wheat organs Mapping Wheat 
ProteomicsBONCAT in Arabidopsis cell culture LC-MS
Determining which proteins are actively synthesised at a given point in time and being able to extract them for analysis is important to understanding plant responses to environmental or developmental stimuli, but there are few verified experimental tools to do this directly or quantitatively. In-vi...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-06-23 | PXD023170 | Pride
Boncat Arabidopsis Lc-ms Cell culture Noncanoical amino acids 
ProteomicsENOD93 interacts with cytochrome c oxidase altering respiratory ATP production and root growth in plants – blue native gel protein complex identification
The early nodulin 93 (ENOD93) gene family in plants can regulate biological nitrogen fixation in legumes and nitrogen use efficiency in cereals but its molecular function is unknown. We show profile hidden Markov models define ENOD93 as a distant homolog of the N-terminal domain of RESPIRATORY SUPER...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-06 | PXD041903 | Pride
Early nodulin 93  mitochondrial oxidative phosphorylation  rcf2  complex iv  atp synthesis 
ProteomicsENOD93 interacts with cytochrome c oxidase altering respiratory ATP production and root growth in plants – targeted analysis of peptides for mitochondrial proteins
The early nodulin 93 (ENOD93) gene family in plants can regulate biological nitrogen fixation in legumes and nitrogen use efficiency in cereals but its molecular function is unknown. We show profile hidden Markov models define ENOD93 as a distant homolog of the N-terminal domain of RESPIRATORY SUPER...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-06 | PXD041995 | Pride
Early nodulin 93  mitochondrial oxidative phosphorylation  rcf2  complex iv  atp synthesis 
TranscriptomicsTranscription profiling of SALK_084897 or SAIL_303_D08 Arabidopsis plants grown under normal conditions or with moderate light and drough treatment applied
4 week old Arabidopsis plants, of ecotype Columbia, SALK_084897 or SAIL_303_D08 were either grown under normal conditions or grown under normal conditions for before having a moderate light and drought treatment applied. Light and drought treatment was applied by withholding water for 5 days prior t...
ORGANISM(S): Arabidopsis thaliana 
2008-04-30 | E-ATMX-32 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis shoots, roots and cell cultures
Microarray analysis of the changes in transcript abundance in cell culture and shoot
ORGANISM(S): Arabidopsis thaliana 
2008-07-19 | E-ATMX-31 | biostudies-arrayexpress
ProteomicsTo invesigate the role of autophagy in Arabidopsis root cellular protein turnover and proteostasis (15N Spike-in root)
Protein turnover analysis using partial 15N labelling and protein abundance analysis using 15N spike-in were coupled to investiage the role of autophagy in protein degradation and proteostasis. Our findings show that dysfuncional autophagy due to loss-of-function autophagy components ATG5 and 11 lea...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-07-12 | PXD010992 | Pride
Arabidopsis 15n labelling Protein turnover Autophagy 
ProteomicsTo invesigate the role of autophagy in Arabidopsis shoot cellular protein turnover and proteomstasis (15N Spike-in shoot)
Protein turnover analysis using partial 15N labelling and protein abundance analysis using 15N spike-in were coupled to investiage the role of autophagy in protein degradation and proteostasis. Our findings show that dysfuncional autophagy due to loss-of-function autophagy components ATG5 and 11 lea...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-10-13 | PXD010948 | Pride
Arabidopsis Protein turnover 15n spike-in Autophagy 
ProteomicsTo invesigate the role of autophagy in Arabidopsis shoot cellular protein turnover and proteostasis, part 2
Protein turnover analysis using partial 15N labelling and protein abundance analysis using 15N spike-in were coupled to investiage the role of autophagy in protein degradation and proteostasis. Our findings show that dysfuncional autophagy due to loss-of-function autophagy components ATG5 and 11 lea...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-07-12 | PXD010932 | Pride
Arabidopsis 15n labelling Protein turnover Autophagy 
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