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TranscriptomicsEffect of CTHRC1 knockdown on gene expression of HCCLM3 cells
Collagen triple helix repeat containing 1 (CTHRC1) has been found to be up-regulated in many human solid tumors. In this study, we investigated the changes of gene expression by comparing CTHRC1-siRNA and Scramble-siRNA control in hepatocellular carcinoma cell line HCCLM3, which has high expression ...
ORGANISM(S): Homo sapiens 
2012-04-22 | E-GEOD-37208 | biostudies-arrayexpress
TranscriptomicsThe development of microRNA expression profile of human umbilical vein endothelial cells (HUVECs) after exposed to HCCLM3 cells
we have employed whole microRNA microarray to see the microRNA expression changes of HUVECs after exposed to HCCLM3 cells examine the microRNA expression profile of HUVECs in the absence or presence of human HCC cells
ORGANISM(S): Homo sapiens 
2013-02-22 | E-GEOD-44567 | biostudies-arrayexpress
GenomicsRNA-seq of CCDC137-APOBEC1 expressing HCCLM3 cells [APOBEC1-seq]
RNA-seq of CCDC137-APOBEC1 expressing HCCLM3 cells [APOBEC1-seq]
PRJNA901391 | ENA
GenomicsGene expression data of SPC25 KD in HCCLM3 cell line
Gene expression data of SPC25 KD in HCCLM3 cell line
PRJNA780555 | ENA
ProteomicsApplication of the HCC spectral library in DIA quantitation
This project stores the search results of MaxQuant2.0.3.0 of 162 HCC cell line raw files and 48 raw files for spectral library generation, and search results of DIA-NN version 1.8 and Spectronaut version15.2 of HepG2, HCCLM3 and TGFB1-stimulated HCCLM3.
ORGANISM(S): Homo sapiens (Human) 
2022-11-11 | PXD037159 | Pride
Hcc celllines hepg2 hcclm3 tgfb1 dia 
ProteomicsLC-MS/MS analysis of phosphorylation modifications of CRTC2 in IR-treated HCCLM3 cells
To systematically identify interaction proteins and phophorylation modifications of CRTC2 in response to DNA damage, we performed PTM assessments by using unbiased, label-free liquid chromatography-tandem mass spectrometry (LC-MS/MS) with CRTC2 pulldown lysates from irradiation (IR)-treated HCCLM3 c...
ORGANISM(S): Homo sapiens (Human) 
2026-04-20 | PXD068727 | Pride
Human Crtc2 Liver cancer Lc-ms/ms 
GenomicsTranscriptome sequencing of wild-type and circpTK2-silenced HCCLM3 cell lines
Transcriptome sequencing of wild-type and circpTK2-silenced HCCLM3 cell lines
PRJNA992076 | ENA
ProteomicsProteomic Analysis of Ginkgolic Acid Targets in HCCLM3 Cells via DARTS-LC-MS/MS
This study aims to identify the potential protein targets of Ginkgolic Acid in human hepatocellular carcinoma HCCLM3 cells using the Drug Affinity Responsive Target Stability (DARTS) assay combined with LC-MS/MS proteomics. Whole cell lysates from Ginkgolic Acid-treated and vehicle control (DMSO) HC...
ORGANISM(S): Homo sapiens (Human) 
2026-03-30 | PXD073111 | Pride
TranscriptomicsRNA-seq of CCDC137-APOBEC1 expressing HCCLM3 cells [APOBEC1-seq]
We established GFP/CCDC137-APOBEC1 transfected HCCLM3 cells.Then doxycycline was added to induce the expression of GFP/CCDC137-APOBEC1.We then performed gene expression profiling analysis using RNA obtained from GFP/CCDC137-APOBEC1 overexpressing HCCLM3 cells with or without doxycycline treatment.
ORGANISM(S): Homo sapiens 
2023-07-01 | GSE217914 | GEO
GenomicsCommunication between the HCCLM3 cells and LX2 cells in a 3D tumor-on-a-chip
Communication between the HCCLM3 cells and LX2 cells in a 3D tumor-on-a-chip
PRJNA858003 | ENA
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