Henry J J - OmicsDI

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Unknown (5219)
Models (331)
Proteomics (183)
Transcriptomics (55)
Genomics (44)
Metabolomics (6)
Genomic (2)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (286)
Mus musculus (26)
Mammalia (19)
Rattus (18)
Oryctolagus cuniculus (17)
Saccharomyces cerevisiae (17)
Escherichia coli (12)
cellular organisms (12)
Cavia porcellus (9)
Arabidopsis thaliana (9)
Eukaryota (6)
Arabidopsis (5)
Canis lupus familiaris (5)
Halobacterium salinarum (5)
Methanosarcina barkeri (4)
Xenopus laevis (4)
Rattus norvegicus (4)
Drosophila melanogaster (3)
Mus (3)
Embryophyta (3)
Ostreococcus tauri (2)
Neurospora crassa (2)
Mycobacterium tuberculosis (2)
Lactococcus lactis (2)
Ovis aries (2)
Chordata (2)
Tetronarce californica (2)
Amniota (1)
Spodoptera frugiperda (1)
Caulobacter vibrioides (1)

Organisms

Mus musculus (12)
Macaca mulatta (2)
Rattus norvegicus (2)
Burkholderia pseudomallei K96243 (1)

Repository

BioModels (331)
PeptideAtlas (99)
biostudies-arrayexpress (60)
MassIVE (40)
pride (37)
EGA (21)
ENA (19)
PanoramaPublic (6)
MetaboLights (5)
dbGaP (2)
GNPS (1)
GPMDB (1)

Tissue

Digestive System (95)
Cell culture (6)
Brain (3)
Epithelial cell (2)
Pancreas (2)
Female Reproductive System (1)
Ovary (1)
Aorta (1)
Blood (1)
Blood plasma (1)
Bone (1)
Breast (1)
Breast cancer cell (1)
Cerebrospinal fluid (1)
Ear (1)
Fibroblast (1)
Heart (1)
Hematopoietic system (1)
Hepatocyte (1)
Kidney (1)
Liver (1)
Malignant cell (1)
Monocyte (1)
Pancreatic ductal adenocarcinoma cell (1)
Pancreatic islet beta cell (1)
Pancreatic islet cell (1)
Permanent cell line cell (1)

Disease

Diabetes mellitus (6)
Breast cancer (3)
Bacterial infectious disease (2)
Human immunodeficiency virus infectious disease (2)
Heart disease (2)
Neurodegenerative disease (2)
Parkinson's disease (2)
Alzheimer's disease (2)
Type 2 diabetes mellitus (2)
Pancreatic ductal adenocarcinoma (2)
Cataract (1)
Cholesterol ester storage disease (1)
Fatty liver disease (1)
Polycythemia due to hypoxia (1)
Mature T-cell and NK-cell lymphoma (1)
Glucocorticoid-remediable aldosteronism (1)
Neonatal abstinence syndrome (1)
Amyloidosis (1)
Toxicity (1)
Burn/trauma (1)
Normal (1)
Not Available (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Cerebrovascular disease (1)
Disease free (1)
Glioblastoma (1)
Ischemia (1)
Malignant mesothelioma (1)
Marfan syndrome (1)
Stroke (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (26)
Bottom-up proteomics (5)
Mass spectrometry (3)
Data-dependent acquisition (3)
Data-independent acquisition (3)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Illumina HiSeq 1500 (1)
Illumina HumanHap 550 (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)

Instrument Platform

LTQ Orbitrap Velos (111)
Q Exactive (8)
Orbitrap Fusion Lumos (7)
LTQ Orbitrap Elite (6)
Q Exactive HF (3)
TripleTOF 5600 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Scanning hardware (2)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
LTQ Orbitrap XL (2)
Q Exactive HF-X (2)
Q Exactive Plus (2)
Liquid Chromatography MS - negative - reverse phase (2)
GenePix 4000 (1)
GenePix 4000B [Axon Instruments] (1)
Illumina NovaSeq 6000 (1)
Instrument (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap (1)
LTQ Velos (1)
MZXML (Originally collected with a thermo orbitrap) (1)
MZXML, from Thermo (converted using msconvert) (1)
Xevo G2-S QTof (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)
Diode array detection MS - alternating - reverse phase (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2005 (232)
2014 (102)
2024 (97)
2022 (16)
2007 (14)
2019 (12)
2023 (10)
2021 (10)
2013 (8)
2025 (8)
2020 (7)
2008 (7)
2016 (6)
2011 (6)
2009 (6)
2018 (5)
2012 (5)
2026 (5)
2015 (4)
2010 (3)
2017 (2)

UNIPROT ID/AC

P30283 (5)
P38634 (5)
P53197 (5)
P24869 (5)
P26309 (5)
P20438 (5)
P20437 (4)
P00549 (4)
P04806 (4)
P00560 (4)
P16862 (4)
P16861 (4)
P00924 (4)
P00950 (4)
P00360 (4)
P06169 (4)
P12709 (4)
P14540 (4)
P11746 (4)
Q9LKL2 (4)
P01308 (4)
P00546 (3)
Q00684 (3)
P24868 (3)
P22434 (3)
P06776 (3)
Q06147 (3)
Q12246 (3)
P50107 (3)
P32327 (3)

ENSEMBL ID

ENSG00000170477 (96)
ENSG00000229353 (49)
ENSG00000147251 (20)
ENSG00000247315 (3)
ENSG00000176092 (2)
ENSG00000204131 (2)
ENSG00000139318 (1)
ENSG00000168646 (1)

CHEBI ID

CHEBI:15422 (21)
CHEBI:16761 (20)
CHEBI:33699 (14)
CHEBI:16908 (12)
CHEBI:15846 (12)
CHEBI:16108 (12)
CHEBI:18367 (12)
CHEBI:16027 (11)
CHEBI:17794 (10)
CHEBI:15361 (10)
CHEBI:29108 (10)
CHEBI:17234 (9)
CHEBI:15343 (9)
CHEBI:16526 (9)
CHEBI:16001 (9)
CHEBI:29052 (9)
CHEBI:15996 (8)
CHEBI:16474 (8)
CHEBI:17552 (8)
CHEBI:17754 (8)
CHEBI:17835 (8)
CHEBI:15428 (8)
CHEBI:16905 (7)
CHEBI:28013 (7)
CHEBI:18021 (7)
CHEBI:16236 (7)
CHEBI:28602 (6)
CHEBI:15351 (6)
CHEBI:15946 (5)
CHEBI:32816 (5)

Metabolite Name

Methionine sulfoxide (2)
Lysotracker Red DND-99 (1)
Glycine 13C2-15N (1)
2-Hydroxybutyric acid (AHB) (1)
Ne-Methyl-Lysine (1)
2-Methylpropanimidate (1)
8-hydroxygeranial (1)
8-oxogeraniol (1)
8-hydroxygeraniol (1)
Teucrein (1)
8-oxogeranial (1)
Carvone (1)
Cis-trans-nepetalactol (1)
Erythrose 4-phosphate (1)
Carbamoyl Aspartate (1)
Asymmetric dimethylarginine (ADMA) (1)
Alpha-Ketoglutarate (aKG) (1)
S-Adenosyl-L-methionine (SAM) (1)
Gamma-aminobutyric acid (GABA) (1)
Formiminoglutamic acid (FIGLU) (1)
5-Hydroxyindole-3-Acetate (1)
S-Adenosyl-L-Homocysteine (SAH) (1)
P-Aminobenzoate (1)
Cis-urocanic acid (1)
4-Hydroxybutyric acid (1)
Geraniol (1)
Acetyl CoA (1)
3-hydroxyisobutyric acid (1)
Dihydroxyacetone phosphate (1)
TAG 70:14 (1)

First Public Date

2014 (15)
2013 (2)
2024 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (304)
Constraint-based model (2)
Delayed differential equation model (1)

Lab affiliation

Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST), Hong Kong (2)
Plateforme protéomique 3P5-Necker, Université Paris Descartes - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS3633, Paris 75014, France (2)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
1. Laboratoire de Spectrométrie de Masse BioOrganique, IPHC UMR 7178, Université de Strasbourg, CNRS, 67000 Strasbourg, France 2. Infrastructure Nationale de Protéomique ProFI – FR2048, 67087 Strasbourg, France (1)
2Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen-Normandie, MNHN, SU, UA, CNRS, IRD, 14032 Caen Cedex, France (1)
Applied Bioinformatics of Cancer University of Edinburgh Cancer Research Centre Institute of Genetics and Molecular Medicine Edinburgh, United Kingdom (1)
Boston University Henry M. Goldman School of Dental Medicine, Department of Molecular & Cell Biology. Boston University School of Medicine, Department of Microbiology (1)
Centre de Recherche en Cancérologie et Immunologie Nantes Angers (CRCINA), INSERM U1232, Paul Papin ICO Cancer Center, Université d’Angers, France. (1)
Chemical Biology and Proteomics, Biogen 225 Binney Street, Cambridge, MA 02142 United States of America (1)
Clayton Foundation Laboratories for Peptide Biology The Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla, CA, USA (1)
Dartmouth College (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (1)
Department of Chemistry, the University of Hong Kong (1)
Division of Metabolism, Endocriology & Diabetes and Department of Internal Medicine, University of Michigan, Ann Arbor, MI, 48105, USA. (1)
HKUST (1)
ICO Cancer Center INSERM U1232 (1)
INRAE, UMR408 Sécurité et Qualité des Produits d'Origine Végétale (1)
IRIC-Université de Montréal (1)
Micalis Institute, INRA, PAPPSO, Université Paris-Saclay, Jouy-en-Josas, France. (1)
Montreal Heart Institute/Institut de Cardiologie de Montréal, Université de Montréal, Montréal, QC, Canada Department of Microbiology, Infectious Diseases and Immunology, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada (1)
NICB - Dublin City University (1)
National Institute for Cellular Biotechnology, Dublin City University (1)
Necker proteomic platform, , PPN-3P5, Structure Federative de Recherche Necker, INSERM US24, (1)
Oncoproteomic Unit (1)
Proteomic Platform of Institut de Microbiologie de la Méditerranée CNRS FR 3479 (1)
Proteomics Team, Nestlé Institute of Health Sciences, Lausanne, Switzerland (1)
Section eScience (S.3), Federal Institute for Materials Research and Testing, Berlin, Germany Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Team SOAP, CRCI2NA, Nantes University, INSERM, CNRS, Université d'Angers, Nantes, France. Equipe Labellisée Ligue Contre le Cancer, Nantes (1)