Histones modifications

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Organisms

Mus musculus (101)
Homo sapiens (87)
Arabidopsis thaliana (20)
Saccharomyces cerevisiae (20)
Drosophila melanogaster (12)
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Xenopus laevis (4)
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Mass Spectrometry (361)
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Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
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MSE (1)
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Instrument Platform

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Ultimate 3000 nano UHPLC system (ThermoFisher Scientific, USA) with a Q Exactive HF hybrid quadrupole-Orbitrap mass spectrometer (Thermo Fisher Scientific, USA), an ESI nanospray source, a higher energy collisional dissociation (HCD) fragmentation mode and data-dependent acquisition (DDA) mode for peptide sequencing. (1)
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CHEBI ID

CHEBI:16034 (1)
CHEBI:27869 (1)
CHEBI:8064 (1)
CHEBI:17293 (1)
CHEBI:58703 (1)
CHEBI:63632 (1)
CHEBI:15638 (1)
CHEBI:86269 (1)
CHEBI:18246 (1)
CHEBI:50091 (1)
CHEBI:15641 (1)
CHEBI:3941 (1)
CHEBI:141204 (1)
CHEBI:28101 (1)
CHEBI:133206 (1)
CHEBI:18272 (1)
CHEBI:18321 (1)
CHEBI:140773 (1)
CHEBI:17625 (1)
CHEBI:15694 (1)
CHEBI:16858 (1)
CHEBI:138560 (1)
CHEBI:25722 (1)
CHEBI:73688 (1)
CHEBI:7954 (1)
CHEBI:5623 (1)
CHEBI:17659 (1)
CHEBI:16927 (1)
CHEBI:17287 (1)
CHEBI:16344 (1)

Metabolite Name

Chloroacetic acid (1)
5,10-Methenyltetrahydrofolic acid (1)
Deoxyuridine triphosphate (1)
5-Methyltetrahydrofolic acid (1)
3-Sulfinoalanine (1)
CDP-Ethanolamine (1)
Trans-3-Hydroxycotinine glucuronide (1)
Pantetheine 4'-phosphate (1)
Questiomycin A (1)
7-Aminomethyl-7-carbaguanine (1)
Topotecan (1)
Gamma-Glutamylcysteine (1)
S-Nitrosoglutathione (1)
3-Nitrotyrosine (1)
Harman (1)
Phosphoguanidinoacetate (1)
Cholestane-3,7,12,25-tetrol-3-glucuronide (1)
N-Acetylaspartylglutamic acid (1)
S-Lactoylglutathione (1)
Phenformin (1)
1,4-beta-D-Glucan (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
N6,N6,N6-Trimethyl-L-lysine (1)
Oxidized glutathione (1)
Citicoline (1)
3-Dehydroxycarnitine (1)
LysoPC(16:0) (1)
Estrone sulfate (1)
N-Acetyl-L-methionine (1)
LysoPC(P-16:0) (1)

First Public Date

2025 (42)
2014 (42)
2023 (40)
2026 (29)
2017 (24)
2022 (20)
2019 (19)
2021 (18)
2015 (16)
2020 (15)
2024 (12)
2013 (12)
2018 (11)
2016 (10)
2010 (1)

Classification

protozoa (5)

Modification

N6 (39)
N6-dimethyl-L-lysine (17)
1x(15)N labeled L-valine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

ChIP-seq (72)
Transcription profiling by array (49)
ChIP-chip by tiling array (39)
RNA-seq of coding RNA (16)
ChIP-chip by array (14)
Other (4)
Methylation profiling by array (4)
Methylation profiling by high throughput sequencing (4)
Unknown experiment type (2)
ATAC-seq (2)
Hi-C (2)
Proteomic profiling by array (2)
RNA-seq of non coding RNA (2)
GRO-seq (1)
Differential (1)
Transcription profiling by tiling array (1)
RNA-seq of total RNA (1)

Release Date

2015 (96)
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2010 (90)
2011 (86)
2014 (81)
2018 (79)
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2020 (70)
2013 (68)
2012 (67)
2017 (63)
2016 (63)
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2024 (55)
2019 (50)
2009 (42)
2008 (42)
2007 (26)
2006 (15)
2005 (10)
2026 (7)
2002 (5)
2003 (4)
2004 (2)
2000 (2)
2001 (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
European Institute of Oncology (10)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (6)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (4)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (4)
European Institute of Oncology, Milan (4)
European Institute of Oncology, Milan, Italy (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (3)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (3)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (3)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
Department of Biological Sciences, Vanderbilt University (2)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy (2)
Department of Experimental Oncology, IEO, Milan (2)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany (2)
Masaryk University (2)
Pacific Northwest National Laboratory, USA (2)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 (2)
School of Biosciences Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (2)
School of Life and Environmental Sciences, University of Sydney, NSW 2006 Australia (2)
Tianjin Medical University (2)
University of Copenhagen Faculty of Health and Medical Sciences Department of Biomedical Sciences (2)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1. Ministry of Education Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Hangzhou, China 2. Cancer Center, Zhejiang University, Hangzhou, China (1)
1Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Dr Aiguader 88, 08003 Barcelona, Spain. 2Universitat Pompeu Fabra, Dr Aiguader 88, 08003 Barcelona, Spain. (1)
1Department of Biochemistry and Biophysics, School of Medicine, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Adolf Butenandt Institut Dept of Molecular Biology Ludwig-Maximilians University Schillerstraße 44 80336 Munich (Germany) http://www.molekularbiologie.abi.med.uni-muenchen.de/personen/becker_group/becker/index.html (1)

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Mitotic post-translational modifications of histones promote chromatin compaction in vitro

As histones undergo major changes in their post-translational modifications during mitotic entry, we speculated that the spectrum of cell cycle-specific histone modifications might contribute to chromosome compaction during mitosis. To test this hypothesis, we isolated core histones from interphase ...

ORGANISM(S): Gallus gallus (Chicken)

2018-10-24 | PXD007116 | Pride

Genome-wide distribution of histones modifications in mouse ESC Rif1+/+ and Rif1-/-

Analyzed histones modifications: H3K9 H3K4 H3K27 H4K20

ORGANISM(S): Mus musculus

2015-12-24 | E-MTAB-3743 | biostudies-arrayexpress

Genome-wide distribution of histones modifications in mouse ESC Rif1+/+ and Rif1-/-

PRJEB9864 | ENA

Protein posttranslational modifications of Giardia histones

Diarrheal disease caused by Giardia duodenalis is highly prevalent, totalling over 200 million cases globally each year. The processes which drive parasite virulence, host immune evasion and transmission involve coordinated gene expression, which are likely post-transcriptionally regulated. Epigenet...

ORGANISM(S): Giardia intestinalis assemblage A

2025-08-28 | PXD019949 | Pride

Methylation Giardia Histones Chromatin Acetylation Phosphorylation

MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones

Histones and histone variants are essential components of the nuclear chromatin. While mass spectrometry has opened a large window to their characterization and functional studies, their identification from proteomic data remains challenging. Indeed, the current interpretation of mass spectrometry d...

ORGANISM(S): Mus musculus (Mouse)

2017-01-11 | PXD005489 | Pride

Proteomics Mass spectrometry Histone Chromatin Histone variants

Mitotic post-translational modifications of histones promote chromatin compaction in vitro.

Not available

S-EPMC5627050 | biostudies-literature

Lysine propionylation and butyrylation are novel post-translational modifications in histones.

Not available

S-EPMC2911958 | biostudies-literature

Analysis of Histones H3 and H4 Reveals Novel and Conserved Post-Translational Modifications in Sugarcane.

Not available

S-EPMC4520453 | biostudies-literature

Modification of histones and their transcriptional response

PRJNA701057 | ENA

Histone ADP Ribosylation - Serine is a new target residue for endogenous ADP-ribosylation on histones

ADPr sites on histones obtained from cells were directly identified. We have identified 12 unique ADPr sites in human osteosarcoma cells and report serine ADPr as a new type of histone mark that responds to DNA damage.

ORGANISM(S): Homo sapiens (Human) Gallus gallus (Chicken)

2016-12-22 | PXD005462 | Pride

Adpr Histones Serine Adp ribosylation

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