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GenomicsHLA Class I/II submissions 240607
HLA class I/II submissions 240607
PRJEB76430 | ENA
GenomicsFull-length HLA class II sequences
Full-length HLA class II sequences
PRJEB42469 | ENA
GenomicsHLA class II subs
HLA class II full-length submissions 30/08/2022
PRJEB55642 | ENA
ProteomicsHLA class II ligandome of colon cancer tissues for neoantigen identification
MS data of HLA class II ligandome of human colon cancer tissues
ORGANISM(S): Homo Sapiens (human) 
2024-09-25 | PXD054060 | JPOST Repository
ProteomicsAccurate prediction of antigen presentation for HLA class II across loci using tailored data acquisition and refined machine learning
Accurate prediction of antigen presentation by Human Leukocyte Antigen (HLA) class II molecules is crucial for rational development of immunotherapies and vaccines targeting CD4 T cell activation. So far, most prediction methods for HLA class II antigen presentation have focused on HLA-DR due to lim...
ORGANISM(S): Homo sapiens (Human) 
2025-07-21 | PXD044810 | Pride
Hla-class ii Netmhciipan-4.3 Antigen presentation Machine learning Hla-dp 
ProteomicsOesophageal Tumour and Normal Oesophageal and Stomach tissue HLA class II Immunopeptidomics
Oesophageal TumOesophageal Tumour and Normal Oesophageal and Stomach tissue were analysed with HLA class II Immunopeptidomics using the L243 antibody
ORGANISM(S): Homo sapiens (Human) 
2026-06-08 | PXD060958 | Pride
Oesphageal tumour Immunopeptidomics Adenocarcinoma Hla class ii 
ProteomicsHLA class II peptidome analysis using data-dependent and data-independent acquisition
HLA class II peptides were purified from Maver-1 and DOHH2 cells and measured on the Q Exactive platform by data-dependent and data-independent acquisition.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-11-22 | MSV000081729 | MassIVE
ProteomicsDeep motif deconvolution of HLA-II peptidomes
CD4 T cells are key for priming and regulating immune recognition of infected and cancer cells, but predictions of class II epitopes have limited accuracy. We profiled over 100’000 HLA-II ligands by Mass Spectrometry and developed a novel motif deconvolution algorithm to analyze these data. Our work...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-10-18 | MSV000096130 | MassIVE
ProteomicsHLA-I and HLA-II peptidomes for NESSIE
MS data of HLA class I and HLA class II ligandome of human colon tissue and LCLs
ORGANISM(S): Homo Sapiens (human) 
2024-08-08 | PXD047303 | JPOST Repository
ProteomicsDeep motif deconvolution of HLA-II peptidomes
CD4 T cells are key for priming and regulating immune recognition of infected and cancer cells, but predictions of class II epitopes have limited accuracy. We profiled over 100’000 HLA-II ligands by Mass Spectrometry and developed a novel motif deconvolution algorithm to analyze these data. Our work...
ORGANISM(S): Homo sapiens (Human) 
2019-10-16 | PXD012308 | Pride
Immunopeptidomics Ligand predictions Mass spectrometry Hla class ii Neoantigens 
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