Hu Chen C - OmicsDI

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Unknown (10357)
Proteomics (293)
Transcriptomics (199)
Metabolomics (49)
Genomics (35)
Models (1)

Organisms

Homo sapiens (247)
Mus musculus (99)
Rattus norvegicus (45)
Arabidopsis thaliana (17)
Oryza sativa (13)
Danio rerio (5)
Saccharomyces cerevisiae (5)
Bos taurus (5)
Glycine max (4)
Drosophila melanogaster (4)
Urocitellus parryii (3)
Macaca mulatta (3)
Oryza sativa Indica Group (2)
Rattus rattus (2)
Eukaryota (1)
Clostridioides difficile 630 (1)
Nannochloropsis oceanica (1)
Cynoglossus semilaevis (1)
Agrobacterium sp. 31749 (1)
Rhodopseudomonas palustris (1)
Vibrio parahaemolyticus (1)
Clonorchis sinensis (1)
Brassica napus (1)
Xenopus laevis (1)
Streptomyces coelicolor (1)
Schizosaccharomyces pombe (1)
Setaria italica (1)
Ovis aries (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (214)
pride (209)
iProX (78)
MetaboLights (48)
EGA (21)
MassIVE (4)
jPOST (2)
BioModels (1)
GNPS (1)

Tissue

Cell culture (70)
Epithelial cell (16)
Leaf (12)
Blood serum (9)
Permanent cell line cell (8)
Blood plasma (7)
Liver (7)
Testis (6)
Embryonic stem cell (5)
Heart (5)
Plant cell (5)
Embryo (4)
Hepatocyte (4)
Macrophage (4)
Stem cell (4)
Brain (3)
Fibroblast (3)
Root (3)
Seedling (3)
T cell (3)
Adipose tissue (2)
Adrenal adenoma cell (2)
B cell (2)
Bone marrow (2)
Colon (2)
Early embryonic cell (2)
Fungal cell (2)
HeLa cell (2)
Kidney (2)
Lung (2)

Disease

Breast cancer (8)
Disease free (4)
Acute leukemia (3)
Cardiovascular system disease (3)
Colon cancer (3)
Non-small cell lung carcinoma (3)
Cervix carcinoma (2)
Hepatocellular carcinoma (2)
Malignant neoplasm of ovary (2)
Stomach cancer (2)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
None- acute control (1)
Benign adenoma (1)
None- Acute Control (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Cancer (1)
Carcinoma (1)
Chronic myeloid leukemia (1)
Chronic obstructive pulmonary disease (1)
Diffuse gastric cancer (1)
Endometrial Endometrioid Adenocarcinoma (1)
Fungal infectious disease (1)
Human immunodeficiency virus infectious disease (1)
Inflammatory bowel disease (1)
Long COVID (1)
Lung carcinoma (1)
Medullary thyroid carcinoma (1)

Technology Type

Mass Spectrometry (209)
Shotgun proteomics (98)
Mass spectrometry (43)
Bottom-up proteomics (41)
Data-dependent acquisition (26)
Affinity purification coupled with mass spectrometry proteomics (20)
Gel-based experiment (20)
Data-independent acquisition (10)
Proteogenomics (8)
Top-down proteomics (8)
SWATH MS (6)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (4)
Mass spectrometry imaging (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, ILLUMINA (1)
NMR spectroscopy (1)
DiaPASEF (1)
Glycoproteomics (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (26)
Liquid Chromatography MS - negative - reverse phase (19)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 2000 (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Orbitrap Fusion Lumos (3)
Illumina HiSeq 1000 (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - positive (2)
Agilent Bioanalyzer (1)
Not applicable (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap Elite (1)
5975C Series GC/MSD (Agilent) (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Bruker (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)

Publication Date

2025 (65)
2022 (55)
2023 (53)
2026 (48)
2024 (46)
2005 (46)
2021 (30)
2016 (25)
2014 (23)
2010 (21)
2019 (21)
2013 (20)
2020 (18)
2012 (18)
2011 (18)
2015 (13)
2018 (9)
2007 (8)
2006 (6)
2017 (5)
2008 (5)
2009 (2)
2004 (1)
2003 (1)

UNIPROT ID/AC

O15530 (1)
P04049 (1)
P07522 (1)
P12931 (1)
P20936 (1)
P28482 (1)
P31749 (1)
P35813 (1)
P52565 (1)
P60484 (1)
P61586 (1)
P62070 (1)
P62993 (1)
P63000 (1)
P98077 (1)
Q02750 (1)
Q06124 (1)
Q07889 (1)
Q13233 (1)
Q13464 (1)
Q15052 (1)
Q16828 (1)
Q8WYR1 (1)
Q96B97 (1)
Q99962 (1)
Q9NZN5 (1)
Q9QX70 (1)

CHEBI ID

CHEBI:16704 (13)
CHEBI:16610 (11)
CHEBI:17154 (11)
CHEBI:15741 (10)
CHEBI:15971 (10)
CHEBI:16359 (10)
CHEBI:16750 (10)
CHEBI:16919 (10)
CHEBI:27432 (10)
CHEBI:30769 (10)
CHEBI:6650 (10)
CHEBI:15354 (9)
CHEBI:16393 (9)
CHEBI:16708 (9)
CHEBI:16709 (9)
CHEBI:17596 (9)
CHEBI:17992 (9)
CHEBI:30915 (9)
CHEBI:46961 (9)
CHEBI:116314 (8)
CHEBI:15428 (8)
CHEBI:16027 (8)
CHEBI:16040 (8)
CHEBI:16196 (8)
CHEBI:16235 (8)
CHEBI:16335 (8)
CHEBI:15996 (1)
CHEBI:16152 (1)
CHEBI:16618 (1)
CHEBI:17552 (1)

Metabolite Name

Creatine (10)
Uridine (9)
Cholic acid (7)
L-Histidine (7)
L-Tryptophan (7)
Spermidine (7)
Adenine (6)
Adenosine (6)
Betaine (6)
Choline (6)
Citric acid (6)
Inosine (6)
L-Alanine (6)
L-Arginine (6)
L-Tyrosine (6)
Acetylcarnitine (5)
Cytidine (5)
Cytosine (5)
Glycine (5)
Guanine (5)
Guanosine (5)
Hypoxanthine (5)
L-Isoleucine (5)
L-Lysine (5)
L-Ornithine (5)
L-Proline (5)
L-Serine (5)
L-Valine (5)
Pantothenic acid (5)
Phosphocholine (5)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
57.021464 (1)
6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (138)
RNA-seq of coding RNA (28)
RNA-seq of non coding RNA (9)
ChIP-seq (8)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by RT-PCR (3)
RNA-seq of total RNA (3)
Unknown experiment type (2)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Hi-C (1)
RIP-seq (1)
Other (1)

Release Date

2025 (1604)
2022 (1393)
2024 (1279)
2023 (1254)
2021 (1161)
2020 (858)
2019 (529)
2018 (460)
2017 (400)
2016 (374)
2015 (273)
2026 (230)
2014 (213)
2013 (134)
2012 (126)
2011 (80)
2010 (54)
2005 (50)
2008 (31)
2009 (30)
2007 (16)
2006 (10)
2004 (4)
2002 (4)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Guangzhou Medical University (4)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (4)
Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Carnegie Mass Spectrometry Facility (2)
College of Life Sciences, South-Central University for Nationalities (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Fudan University (2)
Huazhong Agricultural University (2)
Mayo Clinic, Department of Oncology (2)
Moffitt Cancer Center Tampa, FL, USA (2)
Nanjing Medical University (2)
Shenzhen Hospital of Southern Medical University (2)
The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institutes of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou 310022, China (2)
Yale Cancer Biology Institute (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
Affiliated Cancer Hospital of Hainan Medical University (1)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Beijing Institute of Genomics, Chinese Academy of Sciences, China National Center for Bioinformation (1)
Bengbu medical college (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
Carnegie Science Institution at Stanford (1)
Center of Growth Metabolism and Aging, College of Life Sciences, Sichuan University, Chengdu, China. (1)
China National GenBank,BGI-Shenzhen,Shenzhen 518120,China (1)

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Predicting potential distribution of Ziziphus spinosa (Bunge) H.H. Hu ex F.H. Chen in China under climate change scenarios.

Not available

S-EPMC8855015 | biostudies-literature

Efficient and Specific Generation of MSTN-Edited Hu Sheep Using C-CRISPR.

Not available

S-EPMC10298037 | biostudies-literature

Revealing the Adaptive Metabolic Differences of Different Sheep Breeds in Plateau Areas Based on the Gut-Heart Axis

Gut microbiota plays a significant role in maintaining the homeostasis of the gut internal environment, and the volatile fatty acids (VFAs) produced by it are the main source of energy utilization for the host. The heart, as a key metabolic organ of the body, its energy metabolism efficiency dire...

2025-09-11 | MTBLS12982 | MetaboLights

Four new species of <i>Pseudopoda</i> Jager, 2000 (Araneae, Sparassidae, Heteropodinae) from China and Vietnam.

Not available

S-EPMC11907246 | biostudies-literature

Protemic analysis of the effect of c-di-GMP and c-di-AMP on the protein expression of Mycobacterium smegmatis

c-di-GMP and c-di-AMP are important conserved second messenger in bacteria, they play a critical role in a wide range of cellular processes, such as motility, virulence, biofilm formation, cell-cycle progression and cell development, but there are only two c-di-GMP receptors and one c-di-AMP recepto...

ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

2019-07-03 | PXD010623 | Pride