Human spermatogenesis

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Unknown (1080)
Transcriptomics (302)
Genomics (232)
Proteomics (64)
Other (13)
Methylation profiling (12)
Metabolomics (5)
Genomic (2)
Multiomics (1)

Organisms

Mus musculus (181)
Homo sapiens (142)
Drosophila melanogaster (14)
Rattus norvegicus (11)
Caenorhabditis elegans (6)
Sus scrofa (6)
Solea senegalensis (4)
Oncorhynchus mykiss (4)
Macaca mulatta (4)
Oryza sativa (3)
Ascaris suum (2)
Gorilla gorilla (2)
Ornithorhynchus anatinus (2)
Mesocricetus auratus (2)
Pimephales promelas (1)
Hylobates lar (1)
Callithrix jacchus (1)
Microtus duodecimcostatus (1)
Pan troglodytes (1)
Monodelphis domestica (1)
Drosophila simulans (1)
Pan paniscus (1)
Equus caballus (1)
Macaca fascicularis (1)
Rattus rattus (1)
Aedes aegypti (1)
Triticum aestivum (1)
Gallus gallus (1)
Arabidopsis thaliana (1)
Tachysurus fulvidraco (1)

Organisms

Homo sapiens (84)
Mus musculus (54)
Aliger gigas (2)
Rattus norvegicus (2)
Pediculus humanus (1)
Tachysurus fulvidraco (1)
Caenorhabditis elegans (1)
Sus scrofa (1)
Sus scrofa domesticus (1)

Repository

biostudies-arrayexpress (235)
ENA (183)
geo (131)
pride (37)
iProX (10)
MassIVE (9)
GPMDB (5)
MetaboLights (5)
EGA (4)
jPOST (4)
PeptideAtlas (3)
dbGaP (2)
ExpressionAtlas (1)
PanoramaPublic (1)

Tissue

Testis (23)
Sperm (7)
Cell culture (3)
Seminal plasma (3)
Male Reproductive System (2)
Extracellular vesicle (2)
Stem cell (2)
Others (1)
Kidney (1)
Male germ line stem cell (1)
Peritubular myoid cell (1)
Primary cell (1)
Quadriceps (1)
Sertoli cell (1)
Sperm flagellum (1)
Spermatogenesis (1)
Spermatogonium (1)

Disease

Not Available (5)
Normal (3)
Infertility (2)
Azoospermia (2)
Disease free (2)
Male infertility (2)
Oligoasthenoteratozoospermia (2)
Ejaculatory azoospermia (1)
Testicular seminoma (1)
Cryptorchidism (1)
Cryptozoospermia (1)
These mice have a relatively normal first wave of spermatogenesis but never become fertile. Older animals show increased apoptosis of germ cells, increasing in severity as germ cell stage advances. (1)
Azoospermia (1)
Obesity (1)
Wounds and Injuries (1)
Zika fever (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (25)
Mass spectrometry (5)
Bottom-up proteomics (5)
Data-dependent acquisition (4)
Data-independent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 550 (13)
Illumina HiSeq 2500 (7)
Illumina HiSeq 4000 (5)
Instrument (5)
LTQ Orbitrap (3)
Illumina NovaSeq X (2)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap XL (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
LTQ Orbitrap Velos (2)
Axon-GenePix 4100A (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina HiSeq 1500 (1)
NextSeq 500 (1)
LTQ (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive HF (1)
TripleTOF 6600 (1)
240-MS GC Ion Trap (Varian) (1)
Liquid Chromatography MS - negative (1)

Publication Date

2010 (42)
2014 (36)
2025 (33)
2021 (31)
2015 (30)
2013 (30)
2026 (24)
2008 (24)
2012 (23)
2024 (22)
2018 (17)
2022 (17)
2019 (16)
2011 (15)
2020 (14)
2007 (14)
2023 (12)
2016 (12)
2009 (8)
2004 (5)
2017 (3)
2006 (2)
2005 (2)

UNIPROT ID/AC

A0A087WTX5 (3)
A0A087WXI0 (3)
A0A087WYL9 (3)
A0A087X130 (3)
A0A087X1V9 (3)
A0AVF1 (3)
A0AVT1 (3)
A1L0T0 (3)
A2BFH1 (3)
A2NUT2 (3)
A2RUT3 (3)
A4D110 (3)
A4D1T9 (3)
A5A3E0 (3)
A6NDG6 (3)
A6NEK1 (3)
A6NHL2 (3)
A6NJJ0 (3)
A6NNZ2 (3)
A7E2Y1 (3)
A8MUU1 (3)
A8MYP8 (3)
B1AK88 (3)
B2RXF3 (3)
B3KML9 (3)
B3KT93 (3)
B3KW93 (3)
B4DHB3 (3)
B4DKM5 (3)
B4DL86 (3)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:176360 (1)
CHEBI:176357 (1)
CHEBI:176349 (1)
CHEBI:176345 (1)
CHEBI:140611 (1)
CHEBI:31968 (1)
CHEBI:176352 (1)
CHEBI:31442 (1)
CHEBI:28299 (1)
CHEBI:75630 (1)
CHEBI:75632 (1)
CHEBI:75643 (1)
CHEBI:176355 (1)
CHEBI:80441 (1)
CHEBI:28064 (1)
CHEBI:176415 (1)
CHEBI:176414 (1)
CHEBI:172555 (1)
CHEBI:176413 (1)
CHEBI:176412 (1)
CHEBI:81563 (1)
CHEBI:34102 (1)
CHEBI:176411 (1)
CHEBI:176410 (1)
CHEBI:176409 (1)
CHEBI:168901 (1)
CHEBI:176408 (1)
CHEBI:176407 (1)
CHEBI:176406 (1)
CHEBI:67061 (1)

Metabolite Name

D-Lysine (2)
Arabinosylhypoxanthine (2)
Cinnamoylglycine (2)
Sphingosine (2)
Phenylacetylglutamine (2)
Serotonin (2)
Taurine (2)
Taurocholic acid (2)
Phenylacetylglycine (2)
Adenosine (2)
Uric acid (2)
Guanosine (2)
Creatine (2)
Glycerophosphocholine (2)
Hippuric acid (2)
Azulene, 1,4-dimethyl-7-(1-methylethyl)- (1)
PFSA-pentafluorosulfide (1)
Daptomycin (1)
7-[2-[(4aS,8aS)-4a-hydroxy-1,3,4,5,6,7,8,8a-octahydroisoquinolin-2-yl]-2-oxoethoxy]-3,4-dimethylchromen-2-one (1)
2-Acetamido-3-(1,3-Benzodioxol-5-Yl)-N-(Phenylmethyl)-2-Propenamide (1)
(1,3-dimethyl-2,6-dioxo(1,3-dihydropyrimidin-4-yl))-N-[2-(2-chlorophenoxy)ethy l]carboxamide (1)
Methyl 1-(4-fluorophenyl)-1,2,3,4-tetrahydrobeta-carboline-3-carboxylate (1)
1,4-Ethanonaphthalene-5,10-dicarboxylic acid, 1,4,4a,5,6,8a-hexahydro-5,10-dihydroxy-6,9-dioxo-, bis[[2-(beta-D-glucopyranosyloxy)-3-hydroxyphenyl]methyl] ester (1)
1-{[(3-Cyano-6,7-Dihydro-5H-Cyclopenta[B]Pyridin-2-Yl)Sulfanyl]Acetyl}Proline (1)
Spegatrine (1)
1-(2,5-diphenyl(1,3-oxazol-4-yl))-5-chloro-1,3-dihydropyrimidine-2,4-dione (1)
N-(2-furylmethyl)(2-oxochromen-3-yl)carboxamide (1)
Chlorothalonil TP SYN548008 (1)
Agatholal (1)
Coumaroyl Hexoside (1)

First Public Date

2014 (28)
2026 (23)
2025 (19)
2023 (19)
2020 (18)
2024 (17)
2022 (13)
2021 (9)
2018 (9)
2019 (8)
2013 (8)
2015 (5)
2016 (4)
2017 (3)

Study type

Transcription profiling by array (135)
RNA-seq of coding RNA (27)
RNA-seq of non coding RNA (17)
ChIP-seq (13)
RNA-seq of coding RNA from single cells (10)
Methylation profiling by high throughput sequencing (7)
Animal - Single-cell sequencing (5)
ChIP-chip by tiling array (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Animal - High-throughput sequencing (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Transcription profiling by tiling array (1)
Ribo-seq (1)
Other (1)
MicroRNA profiling by array (1)
CUT&RUN (1)
RNA-seq of total RNA (1)

Release Date

2021 (116)
2022 (109)
2020 (95)
2023 (94)
2025 (81)
2024 (81)
2014 (78)
2010 (70)
2019 (66)
2015 (62)
2018 (61)
2016 (55)
2017 (52)
2012 (52)
2013 (51)
2011 (46)
2008 (34)
2009 (27)
2007 (17)
2026 (16)
2006 (11)
2005 (11)
2004 (10)
2000 (7)
2001 (3)
1999 (3)
1998 (3)
2002 (2)
2003 (1)

Lab affiliation

Functional Proteomics Lab, Dpt. Life Sciences, University of Siena, Italy (2)
West China Second University Hospital, Sichuan University (2)
Biomedical Center Institute for Metabolic Biochemistry Ludwig-Maximilians-University Feodor-Lynen Strasse 17 81377 Munich Germany & German Center for Neurodegenerative Diseases (DZNE) Feodor-Lynen Strasse 17 81377 Munich Germany (1)
Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, 100191, China; (1)
Center for Reproductive Medicine, Peking University Third Hospital, Beijing 100191, China (1)
Centre for Medical Genetics, Institute of Reproductive Genetics, University of Münster, Vesaliusweg 12-14, 48149 Münster, Germany. (1)
Centre for Medical Genetics, Institute of Reproductive Genetics, University of Münster, Vesaliusweg 12-14, 48149, Münster, Germany. (1)
Colorado Center for Reproductive Medicine, CO, USA (1)
Cornell University (1)
Department of Biochemistry and Molecular Biology, State Key Laboratory of Common Mechanism Research for Major Diseases, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, and Peking Union Medical College, Beijing 100005, China (1)
Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic (1)
Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic Institute of Physiology of the Czech Academy of Sciences, Laboratory of Structural Biology of Signaling Proteins, Division BIOCEV, Vestec, Czech Republic (1)
Department of Tropical Medicine, Medical Microbiology, and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA (1)
Department of Urology & Andrology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310016, China (1)
Gamete and Embryo Biology Department, Institute of Animal Reproduction and Food Research, Polish Academy of Sciences in Olsztyn (1)
Genetics Unit, Department of Biomedical Sciences, Faculty of Medicine, Casanova 143, 08036 Barcelona, Spain (1)
Ghent University VIB Belgium (1)
Head of Clinical Biochemistry Mount Sinai Hospital and University Health Network, Professor & Head, Division of Clinical Biochemistry Department of Laboratory Medicine & Pathobiology, University of Toronto (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center (Faculty of Medicine) Ludwig-Maximilians-University of Munich Großhadernerstr. 9 82152 Planegg-Martinsried GERMANY (1)
Institute for Genetics and Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Strasse 26, 50931 Cologne, Germany. Center for Molecular Medicine (CMMC), University of Cologne, 50931 Cologne, Germany (1)
Institute of Advanced Clinical Medicine, Institute of Medical Technology, Peking University Beijing, China. (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany; Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany; Cardio-Pulmonary Institute, Frankfurt am Main, Germany (1)
Laboratory for Functional Genome Analysis LAFUGA, Gene Center, LMU München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany (1)
Laboratory for Functional Genome Analysis LAFUGA, Gene Center, LMU München, München, Germany (1)
Laboratory for RNA Cancer Biology Department of Oncology, LKI, KU Leuven (1)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (1)
Molecular Genetics, RPTU Kaiserslautern, Germany (1)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (1)
Rajiv Gandhi Centre for Biotechnology Thycaud PO Poojappura Thiruvananthapuram Kerala 695 014, India (1)
Research Centre for Genetic Engineering and Biotechnology “Georgi D Efremov”, Macedonian Academy of Sciences and Arts, Skopje, Krste Misirkov 2, 1000 Skopje, Republic of North Macedonia (1)

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Zika virus disrupts steroidogenesis and impairs spermatogenesis by stalling the translation of CYP17A1 mRNA

ZIKV infection is associated with testicular damage and abnormal spermatogenesis. However, the molecular mechanisms underlying these pathogenic processes remain unclear. Here, we demonstrate that ZIKV disrupts Leydig cells' ability to produce testosterone, leading to decreased sperm counts and mo...

2025-06-29 | MTBLS12549 | MetaboLights

Untargeted metabolomic profiling of seminal plasma in nonobstructive azoospermia men: A noninvasive detection of spermatogenesis

Male factor infertility is involved in almost half of all infertile couples. Lack of the ejaculated sperm owing to testicular malfunction has been reported in 6-10% of infertile men, a condition named nonobstructive azoospermia (NOA). In this study, we investigated untargeted metabolomic profiling o...

2018-04-19 | MTBLS420 | MetaboLights

Probiotics alleviated heat stress-induced spermatogenesis dysfunction by remodeling gut microbiota and producing arginine and pantothenic acid

BACKGROUND: Large-scale farms struggle to effectively address summer heat stress (HS) in dairy goats, which impairs spermatogenesis and reduces reproductive performance by compromising gut and reproductive organ health in male animals. Although Clostridium butyricum (CB) and Enterococcus faecium ...

2025-07-31 | MTBLS12573 | MetaboLights

Transcriptomic analysis of human spermatogenesis

PRJNA649963 | ENA

Methylome study on human spermatogenic cells

DNA methylation is an important regulator of the chromatin structure and is necessary for gene expression stability and maintenance of cell identitiy. However, to which extent DNA methylation changes during the key differentiation steps of human spermatogenesis remains largely unkown. Here, we gener...

EGAS00001007449 | EGA

Complementary critical functions of Zfy1 and Zfy2 in mouse spermatogenesis and reproduction

The mammalian Y chromosome plays a critical role in spermatogenesis. However, the exact functions of each gene in the Y chromosome have not been completely elucidated, partly owing to difficulties in gene targeting analysis of the Y chromosome. Zfy was first proposed to be a sex determination factor...

ORGANISM(S): Mus <mouse, Genus> (ncbitaxon:10088)

2016-11-24 | MSV000080355 | MassIVE

Human testis phosphoproteome reveals kinases as potential targets in spermatogenesis and testicular cancer

Spermatogenesis is a complex cell differentiation process that includes marked genetic, cellular functional and structural changes. It requires tight regulation, since disturbances in any of the spermatogenic stages would lead to fertility deficiencies. In order to increase our knowledge of signal t...

ORGANISM(S): Homo sapiens (Human)

2019-02-01 | PXD010246 | Pride

Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa (Illumina)

In higher eukaryotes, histone methylation is involved in the maintenance of cellular identity during somatic development. During spermatogenesis, Since most nucleosomes are replaced by protamines during spermatogenesis . Iit is therefore unclear whether if histone modifications function in paternal ...

ORGANISM(S): Homo sapiens

2010-05-16 | E-GEOD-19889 | biostudies-arrayexpress

Histone H3.3 regulates dynamic chromatin states during spermatogenesis

We used H3f3b-/- testes to analyze the impact of H3f3b derived H3.3 on spermatogenesis. Analysis of Histone H3 (Lys 4) tri-methylation in H3f3b WT/WT and H3f3b -/- testes tissue.

ORGANISM(S): Mus musculus

2014-09-09 | E-GEOD-60207 | biostudies-arrayexpress

Dysfunction of CEP128 impairs spermatogenesis but not ciliogenesis in humans and mice

The centrosome is a conserved eukaryotic organelle essential for reproductive process, and centrosomal proteins (CEP) are necessary for composition of the centrosome. However, few CEPs have been genetically linked to fertility, and the related molecular mechanisms remains mysterious. Here, we identi...

ORGANISM(S): Mus musculus (Mouse)

2022-05-19 | PXD022731 | Pride

Cep128 infertility spermatogenesis centrosome

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