Hunter G G - OmicsDI

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Unknown (2452)
Transcriptomics (331)
Proteomics (86)
Genomics (55)
Metabolomics (29)
Genomic (2)
Models (1)

Organisms

Drosophila melanogaster (236)
Mycobacterium tuberculosis SP7 (74)
Mycobacterium tuberculosis SP10 (74)
Homo sapiens (73)
Mus musculus (37)
Gallus gallus (6)
Arabidopsis thaliana (5)
Apis mellifera (4)
Eugenia uniflora (3)
Brassica napus (3)
Zea mays (2)
Ovis aries (2)
Candida albicans (2)
Rattus norvegicus (2)
Jatropha curcas (1)
Branchiostoma belcheri (1)
Rhipicephalus microplus (1)
Papio anubis (1)
Tetraodon nigroviridis (1)
Bombyx mori (1)
Ciona intestinalis (1)
Schistosoma mansoni (1)
Emiliania huxleyi (1)
Cricetulus griseus (1)
Oncorhynchus mykiss (1)
Bos taurus (1)
Glycine max (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (350)
pride (74)
EGA (35)
MetaboLights (28)
MassIVE (6)
PanoramaPublic (3)
dbGaP (2)
PAXDB (2)
BioModels (1)
GNPS (1)
jPOST (1)
ENA (1)

Tissue

Cell culture (24)
Heart (5)
Permanent cell line cell (5)
Photosynthetic cell (4)
Epithelial cell (4)
Brain (3)
Colon (3)
White adipocyte (2)
Dental plaque (2)
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Plant cell (2)
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Retina (1)

Disease

Disease free (3)
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Colitis (2)
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Not applicable (1)
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IRAK-4 Q293X mutation (1)
Infected (1)
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S enteritidis (1)
Diffuse midline glioma (1)
Sarcoidosis (1)
Psoriasis (1)
Parasitic helminthiasis infectious disease (1)
Cervix carcinoma (1)
Melanoma (1)
Plasmodium vivax malaria (1)
Glioblastoma (1)
Wounds and Injuries (1)
Colon cancer (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (74)
Shotgun proteomics (38)
Mass spectrometry (26)
Bottom-up proteomics (16)
Data-dependent acquisition (11)
SWATH MS (10)
Affinity purification coupled with mass spectrometry proteomics (5)
Illumina HiSeq 2000 (3)
Gel-based experiment (3)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Top-down proteomics (2)
Illumina OncoArray (1)
Illumina Exome 250K (1)
Affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (9)
Gas Chromatography MS - positive (6)
ScanArray 5000 [PerkinElmer] (4)
Liquid Chromatography MS - positive - hilic (4)
Illumina NovaSeq 6000 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - negative - hilic (3)
Scanning hardware (2)
Axon GenePix 4000B scanning hardware (2)
NextSeq 2000 (2)
Illumina HiSeq 2000 (2)
6495C Triple Quadrupole LC/MS (2)
Hamamatsu Nanozoomer S60 (1)
MiRNeasy Serum/Plasma Advanced Kit (1)
DNA Genotek collection tubes (Ref CP-190) (1)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
Other (1)
Illumina (1)
DNBSEQ-G400 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
8890 GC/MS (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Q Exactive (1)
Orbitrap Fusion Lumos (1)

Publication Date

2011 (121)
2010 (68)
2013 (66)
2012 (23)
2025 (20)
2024 (16)
2021 (16)
2023 (16)
2015 (14)
2026 (12)
2022 (11)
2014 (11)
2018 (10)
2016 (9)
2008 (8)
2007 (8)
2020 (8)
2019 (7)
2017 (6)
2004 (6)
2009 (4)
2005 (4)
2006 (2)

UNIPROT ID/AC

A0A1S3DCH7_DIACI (2)
A0A1S4EEC8_DIACI (2)
A0A1S3DEU5_DIACI (2)
A0A1S3DF65_DIACI (2)
A0A1S3DS85_DIACI (2)
A0A1S3CXT5_DIACI (2)
A0A1S3D499_DIACI (2)
A0A1S3DAV7_DIACI (2)
A0A1S3D6F7_DIACI (2)
A0A3Q0J7V3_DIACI (2)
A0A1S3D2G9_DIACI (2)
A0A1S3DNC6_DIACI (2)
A0A3Q0J3M2_DIACI (2)
A0A3Q0IZ51_DIACI (2)
A0A1S3DND1_DIACI (2)
A0A1S3CZ14_DIACI (2)
A0A3Q0JJI0_DIACI (2)
A0A1S3DLF8_DIACI (2)
A0A1S3DQ09_DIACI (2)
A0A1S3DSM7_DIACI (2)
A0A1S3DM82_DIACI (2)
A0A1S3DI94_DIACI (2)
A0A1S4EAP3_DIACI (2)
A0A3Q0J6U2_DIACI (2)
A0A1S3DAB0_DIACI (2)
A0A3Q0JED0_DIACI (2)
Q9Z1B3 (1)
Q8R071 (1)
P35412 (1)
P27600 (1)

CHEBI ID

CHEBI:17822 (5)
CHEBI:18257 (5)
CHEBI:15428 (5)
CHEBI:28044 (5)
CHEBI:17992 (4)
CHEBI:26271 (4)
CHEBI:24898 (4)
CHEBI:16335 (4)
CHEBI:27266 (4)
CHEBI:30915 (4)
CHEBI:17368 (4)
CHEBI:30769 (4)
CHEBI:84659 (3)
CHEBI:85743 (3)
CHEBI:84662 (3)
CHEBI:84665 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:18186 (3)
CHEBI:16811 (3)
CHEBI:16708 (3)
CHEBI:16977 (3)
CHEBI:25017 (3)
CHEBI:17268 (3)
CHEBI:16865 (3)
CHEBI:18211 (3)
CHEBI:17964 (3)
CHEBI:29108 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)

Metabolite Name

Phenylalanine (3)
Sucrose (3)
DGMP (2)
Serine (2)
Proline (2)
Valine (2)
Citrulline (2)
Ornithine (2)
Methionine (2)
Oleic acid (2)
Isoleucine (2)
Hypoxanthine (2)
TAG 59:12 (15:0/22:6/22:6) (1)
TAG 55:7 (15:0/18:1/22:6) (1)
TAG 55:6 (15:0/18:0/22:6) (1)
TAG 55:1 (15:0/18:1/22:0) (1)
TAG 53:6 (15:0/16:0/22:6) (1)
TAG 53:4 (15:0/18:1/20:3) (1)
TAG 51:5 (15:0/18:1/18:4) (1)
TAG 51:4 (15:0/18:1/18:3) (1)
TAG 51:3 (15:0/18:1/18:2) (1)
TAG 51:2 (15:0/18:1/18:1) (1)
TAG 51:1 (15:0/18:0/18:1) (1)
TAG 49:1 (15:0/16:0/18:1) (1)
TAG 48:1 (14:0/16:0/18:1) (1)
TAG 48:1 (15:0/15:0/18:1) (1)
TAG 47:1 (14:0/15:0/18:1) (1)
PC 37:6 (15:0/22:6) (1)
D-galactopyranose (1)
Decyl oleate (1)

IsPrivate

False (1)

First Public Date

2021 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

ChIP-chip by tiling array (181)
Transcription profiling by array (75)
RNA-seq of coding RNA (33)
RNA-seq of non coding RNA (29)
ChIP-seq (19)
RNA-seq of coding RNA from single cells (4)
Unknown experiment type (2)
RNA-seq of total RNA (2)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
4C (1)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

2022 (255)
2021 (237)
2023 (220)
2020 (191)
2025 (189)
2024 (188)
2011 (168)
2019 (164)
2015 (154)
2013 (146)
2016 (145)
2017 (130)
2018 (129)
2010 (118)
2014 (100)
2012 (90)
2009 (46)
2008 (39)
2026 (35)
2007 (15)
2005 (12)
2006 (10)
2004 (10)
2002 (4)
2001 (3)
2003 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Bioplatforms Australia (7)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, CH-8093 Zurich, Switzerland. Faculty of Science, University of Zurich, CH-8057 Zurich, Switzerland (2)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (2)
Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, U.K. (1)
Professor, Department of Biotechnology, Alagappa University, Karaikudi (1)
GLOBE Institute, University of Copenhagen (Denmark) (1)
Charles Perkins Centre and School of Medical Sciences, University of Sydney, Australia (1)
Biological mass spectrometry and proteomics group, Department of Chemistry High-resolution mass spectrometry platform, Core research facilities Guangdong provincial key laboratory for cell microenvironment and disease research Southern University of Science and Technology (SUSTech) 403, 1st research building, 1088 Xueyuan Rd., Nanshan, Shenzhen (1)
Dr. Sanjeeva Srivastava, Proteomics Laboratory, Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India (Lab head). (1)
Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, USA (1)
1. Cancer Signalling Research Group, School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, Callaghan, NSW, AUSTRALIA 2. Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, AUSTRALIA 3. Paediatric Program, Mark Hughes Foundation Centre for Brain Cancer Research, College of Health, Medicine, and Wellbeing, Callaghan, NSW, AUSTRALIA (1)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str. D-52425 Juelich Germany (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, Třeboň,CZ. (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Bioplatforms Australia (project manager) (1)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)
Department of Molecular Biology and Biotechnology, University of Sheffield (1)
IBERS, Aberystwyth University (1)
The Globe Institue, University of Copenhagen (1)
Alexander Schmidt, Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland, Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Professor, Amrita Agilent Analytical Research Center Amrita School of Biotechnology Amrita Vishwa Vidyapetham Kerala, India (lab head), Phone: +91 8547735499 (1)
Alexander Schmidt, Biozentrum, University of Basel Spitalstrasse 41, CH-4056 Basel, Switzerland Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
University of Kiel Institute of Biochemistry Unit for Degradomics of the Protease Web Otto-Hahn-Platz 9 24118 Kiel Germany (1)
Faculty of Health and Medical Sciences University of Surrey (1)
Department of Chemical Science, University of Naples 'Federico II' (1)
City University of New York (CUNY) Hunter College, Chair of the Molecular Cellular and Developmental PhD subprogram at the CUNY Graduate Center (1)
School of Medical Sciences, Faculty of Medicine and Healthy, University of Sydney, Sydney, Australia. (1)
Susanne Gabrielsson Associate Professor Experimental Immunology Karolinska Institutet Dept. of Medicine, Translational Immunology Unit KS L2:04, 17 176 Stockholm Sweden NOTE : the proteomic data was produced at Turku University/Åbo Akademi Turku Centre for Biotechnology. Directed by Professor Riitta Lahesmaa http://www.btk.fi/home/main/ http://www.btk.fi/proteomics/front-page/ (1)
Centre for Proteome Research, Dept. Biochemistry & Systems Biology, University of Liverpool, Liverpool, UK (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology Whitehead Institute of Biomedical Research (1)

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AtLEGbeta / gamma protease specificity and putative substrate characterization by HUNTER

Arabidopsis thaliana Legumain (aka VPE) beta / gamma were characterized for their cleavage specificity and putative substrates were identified by the N-termini enrichment method HUNTER.

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2020-07-29 | PXD019276 | Pride

Arabidopsis thaliana legumain vpe beta gamma protease hunter substrates

Optimization of HUNTER N-termini profiling using rat brain proteome extracts

Optimization hydrophobic tagging reaction time (30 min to 2h) and evaluation of the HUNTER protocol performance with different amounts (25 ug to 400 ug) of purified rat brain proteome as starting material.

ORGANISM(S): Rattus norvegicus (Rat)

2019-09-03 | PXD012844 | Pride

Wistar rat hunter n-termini

Murine colon HUNTER N-terminomics

The mammalian lysosomal protease legumain is often dysregulated in pathophysiological conditions including inflammation, neurodegeneration, and cancer, yet its proteolytic targets are poorly defined. To profile protease substrates degradomics techniques typically employ enrichment strategies to sele...

ORGANISM(S): Mus musculus (Mouse)

2025-09-29 | PXD060854 | Pride

Legumain Mouse Colon Colitis Hunter

Acute Stress Induced Increase in Histone H3 Lys 9 Trimetylation in Rat Hippocampus

We utilized ChIP Seq to examine the the genomic localization of the increase in H3K9 trimethylation we had previously observed in the hippocampus as a consequence of acute restraint stress in rats (Hunter et. al PNAS 2009). Rats were restrained for 30 minutes, allowed to recover for 1 hour and then ...

ORGANISM(S): Rattus norvegicus

2012-11-02 | E-GEOD-41217 | biostudies-arrayexpress

Enterocyte–ILC1 crosstalk drives innate IFN-g-mediated control of Cryptosporidium

PRJNA713385 | ENA

Thiostrepton inhibits stable 70S ribosome binding and ribosome-dependent GTPase activation of elongation factor G and elongation factor 4.

Not available

S-EPMC3245911 | biostudies-literature

Therapeutic activation of G protein-coupled estrogen receptor 1 in Waldenstrom Macroglobulinemia.

Not available

S-EPMC9469525 | biostudies-literature

BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups.

Not available