Ie - OmicsDI

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Unknown (13945)
Genomics (462)
Transcriptomics (445)
Proteomics (142)
Clinical (29)
Metabolomics (16)
Other (8)
Models (3)
Methylation profiling (3)
Genomic (1)

Organisms

Homo sapiens (228)
Mus musculus (129)
Rattus norvegicus (16)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (10)
Arabidopsis thaliana (10)
Geobacter sulfurreducens (8)
Ovis aries (6)
Caenorhabditis elegans (5)
Escherichia coli (4)
Bacillus amyloliquefaciens (4)
Sus scrofa (4)
Macaca mulatta (4)
Helianthus annuus (4)
Buchnera aphidicola (3)
Schizosaccharomyces pombe (3)
Candidatus Palibaumannia cicadellinicola (2)
Candidatus Karelsulcia muelleri (2)
Homalodisca vitripennis (2)
synthetic construct (2)
Aspergillus fumigatus (2)
Schistosoma mansoni (2)
Salmo salar (2)
Danio rerio (2)
Epinephelus coioides (2)
Streptococcus gordonii str. Challis (1)
Saccharomyces bayanus x Saccharomyces cerevisiae (1)
Pongo pygmaeus (1)
Leishmania infantum (1)
Schistosoma japonicum (1)

Organisms

Homo sapiens (98)
Mus musculus (72)
Danio rerio (6)
Arabidopsis thaliana (6)
Ovis aries (4)
Rattus norvegicus (4)
Escherichia coli (3)
Larkinella bombi (2)
Helianthus annuus (2)
Solanum lycopersicum (2)
Drosophila melanogaster (2)
Caenorhabditis elegans (2)
Saccharomyces cerevisiae (2)
Streptococcus sp. NPS 308 (1)
Trichophyton verrucosum (1)
Streptococcus gordonii str. Challis (1)
Mycobacterium tuberculosis CDC1551 (1)
Escherichia coli O157:H7 str. Sakai (1)
Human betaherpesvirus 5 (1)
Providencia rettgeri (1)
Neisseria gonorrhoeae (1)
Streptococcus mutans (1)
Enterococcus faecalis (1)
Streptococcus pyogenes (1)
Plasmodium falciparum (1)
Staphylococcus aureus (1)
Pediococcus pentosaceus IE-3 (1)
Acropora formosa (1)
Neospermospora avenae (1)
Rothia mucilaginosa (1)

Repository

ENA (402)
biostudies-arrayexpress (363)
geo (128)
pride (125)
EGA (24)
MassIVE (14)
MetaboLights (12)
BioModels (3)
GNPS (3)
PAXDB (2)
dbGaP (1)
iProX (1)
MetabolomicsWorkbench (1)
NODE (1)

Tissue

Cell culture (24)
Epithelial cell (10)
Embryonic stem cell (9)
B cell (7)
Plant cell (7)
Brain (7)
Lung (6)
Heart (5)
Blood (5)
Blood plasma (5)
Primary cell (4)
Fibroblast (4)
Dendritic cell (3)
Oocyte (3)
Microglial cell (3)
Cell suspension culture (3)
T cell (3)
Embryo (3)
Macrophage (3)
Kidney proximal straight tubule epithelial cell (2)
Skeletal muscle myoblast in skeletal muscle (2)
Endothelial cell (2)
Seedling (2)
Erythrocyte (2)
Root (2)
Blood cell (2)
Skin (2)
Colon (2)
Leaf (2)
Blood (1)

Disease

Colorectal Neoplasms (6)
HHV-6B infected (2)
Ovarian tumor (2)
Normal (2)
Breast cancer (2)
Gastrointestinal cancer (2)
Bowel cancer (2)
Colorectal cancer (2)
Bacterial infectious disease (1)
Cytomegalovirus seropositive (1)
Hypotension (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Porphyria NOS (1)
Sb tumours (1)
Diabetes mellitus (1)
Suspect S. aureus endocarditis (1)
Central nervous system cancer (1)
Acute myeloid leukemia (1)
Advanced RAS Wild type right sided Colorectal cancer (1)
Malignant neoplasm of anus and anal canalc18Malignant neoplasm of colon, c19Malignant neoplasm of rectosigmoid junction, c20Malignant neoplasm of rectum, c21 (1)
Cataract (1)
Advanced abdominal cancers (1)
Colorectal polyps/cancer (1)
Cancer-Bowel-Back passage (rectum) or large bowel (colon) (1)
Ulcerative Colitis (1)
Adenomatous Polyps (1)
Metastatic Colorectal Cancer (1)
Colon cancer (1)
Melanoma (1)
Metastatic colorectal cancer (1)

Technology Type

Mass Spectrometry (126)
Shotgun proteomics (63)
Affinity purification coupled with mass spectrometry proteomics (27)
Bottom-up proteomics (17)
Mass spectrometry (11)
Data-dependent acquisition (11)
Gel-based experiment (10)
Data-independent acquisition (8)
SRM/MRM (6)
SWATH MS (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Immunopeptidomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
HumanOmni1 Quad BeadChip (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
ESI (1)
All-ion fragmentation (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Illumina HiSeq 2500 (4)
Illumina HiSeq 4000 (3)
NextSeq 500 (3)
Orbitrap Exploris 480 (3)
Q Exactive Plus (3)
Q Exactive (3)
GenePix 4000A [Axon Instruments] (2)
Generation III Scanner (2)
Scanning hardware (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap XL (2)
Impact II (2)
TimsTOF Pro (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (2)
Axon GenePix4000B (1)
Fluidigm C1 (1)
Agilent 2100 Bioanalyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
G2505A DNA microarray scanner [Agilent] (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 3000 (1)
6546 LC Q-TOF (Agilent Model) (1)
LTQ Velos (1)
LTQ Orbitrap Velos (1)

Publication Date

2010 (65)
2012 (52)
2015 (41)
2013 (38)
2014 (37)
2011 (33)
2025 (32)
2008 (31)
2024 (30)
2023 (30)
2022 (30)
2009 (28)
2026 (28)
2021 (26)
2019 (25)
2020 (24)
2016 (23)
2007 (21)
2018 (15)
2005 (12)
2006 (11)
2017 (10)
2004 (7)
2003 (1)

UNIPROT ID/AC

LAMB3_MOUSE (2)
COLQ_MOUSE (2)
CFA53_MOUSE (2)
MMP9_MOUSE (2)
S6A14_MOUSE (2)
LOXL3_MOUSE (2)
CFA57_MOUSE (2)
SG3A2_MOUSE (2)
ABCA5_MOUSE (2)
CC151_MOUSE (2)
Q80UR4_MOUSE (2)
SPAT6_MOUSE (2)
S39A8_MOUSE (2)
MCPT8_MOUSE (2)
SP17_MOUSE (2)
VGFR1_MOUSE (2)
DLRB2_MOUSE (2)
LFNG_MOUSE (2)
PAR6B_MOUSE (2)
D3YVL2_MOUSE (2)
MIEAP_MOUSE (2)
GRAA_MOUSE (2)
CFA69_MOUSE (2)
C1QT2_MOUSE (2)
CLC1A_MOUSE (2)
M4A4D_MOUSE (2)
MUC1_MOUSE (2)
SPA6L_MOUSE (2)
P0A7L0 (1)
P0AG67 (1)

CHEBI ID

CHEBI:17596 (5)
CHEBI:36062 (4)
CHEBI:6650 (4)
CHEBI:16112 (4)
CHEBI:16335 (4)
CHEBI:16750 (4)
CHEBI:17385 (3)
CHEBI:89556 (3)
CHEBI:16449 (3)
CHEBI:17750 (3)
CHEBI:16243 (3)
CHEBI:520 (3)
CHEBI:16113 (3)
CHEBI:68329 (3)
CHEBI:24848 (3)
CHEBI:171798 (3)
CHEBI:28088 (3)
CHEBI:81556 (3)
CHEBI:17754 (3)
CHEBI:17148 (3)
CHEBI:15428 (3)
CHEBI:16865 (3)
CHEBI:16027 (3)
CHEBI:17568 (3)
CHEBI:18089 (3)
CHEBI:18107 (3)
CHEBI:16914 (3)
CHEBI:30746 (3)
CHEBI:28197 (3)
CHEBI:15891 (3)

Metabolite Name

Genistein (3)
Daidzein (3)
2,4,5-tricaffeoylaltraric acid (2)
2,3,5-tricaffeoylaltraric acid (2)
Protocatechuic acid (2)
Biflavonoid (2)
1,5-dicaffeoylquinic acid (2)
Altraric acid (2)
3-O-methylquercetin (2)
Quinic acid (2)
Putrescine (2)
Tyrosine (2)
Valine (2)
Methionine (2)
Thymidine (2)
Xanthosine (2)
Xanthine (2)
Guanosine (2)
Isoleucine (2)
Proline (2)
Citrulline (2)
Alanine (2)
Asparagine (2)
Threonine (2)
Aspartate (2)
Phenylalanine (2)
Ornithine (2)
Resveratrol (2)
Isoxanthohumol (2)
Enterodiol (2)

First Public Date

2014 (64)
2025 (50)
2021 (42)
2024 (34)
2023 (32)
2020 (31)
2026 (30)
2022 (26)
2015 (24)
2019 (23)
2013 (15)
2018 (12)
2017 (12)
2016 (5)
2012 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (14)
Recruiting (10)
Not yet recruiting (5)

Lab affiliation

Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg, Germany (5)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (3)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany (2)
Division of Cell Signalling and Immunology, University of Dundee, Dundee, UK. (2)
Harald zur Hausen Institute of Virology, Uniklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany. (2)
Cardiac Bioengineering group, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia (2)
Marseille Protéomique Centre de Recherche en Cancérologie de Marseille Institut Paoli Calmettes - Inserm U1068 - CNRS UMR7258 - Aix Marseille Université UM105 27, Bd Leï Roure, BP30059, 13273 Marseille Cedex 9, France (2)
Proteomics Unit Max Planck Institute of Immunobiology and Epigenetics Stuebeweg 51 79108 Freiburg, Germany (2)
Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece (2)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (2)
Instituto de Nanobiotecnologıa (NANOBIOTEC), UBA-CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina (2)
Professor Fellow, American Institute for Medical and Biological Engineering Fellow, American Association for the Advancement of Science Rutgers University Department of Cell Biology and Neuroscience (2)
Proteomics Unit Max Planck Institute of Immunobiology and Epigenetics (2)
Centre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, Australia (1)
Integrated Mass Spectrometry Unit, Michigan State University, Grand Rapids Research Center, USA (1)
Department of Anatomy and Cell Biology, Université de Sherbrooke, Canada (1)
Professor of Molecular Biology, University of Dundee (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Liverpool School of Tropical Medicine (1)
nstitute for Intelligent Biotechnologies, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany Institute for Stroke and Dementia Research, Klinikum der Universität München, Ludwig-Maximilians-Universität LMU, Munich, German School of Medicine, Koç University, İstanbul, Turkey Deep Piction, Munich, Germany (1)
Fertility & Research Centre, School of Clinical Medicine, Faculty of Medicine & Health, University of New South Wales, Australia (1)
Laboratory for Medical Massspectroemtry Aalborg University (1)
Max Planck Institute of Immunobiology and Epigenetics Freiburg, Germany (1)
School of Plant Sciences University of Arizona, USA (1)
Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany (1)
University of Manchester. Professor (1)
Helmholtz Zentrum München, Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany (1)
Center for Neurodegenerative Science, Van Andel Institute, Grand Rapids, MI, 49503 USA (1)
Laboratory of proteomic analysis of Scientific Research Institute of Physical-Chemical Medicine, Moscow, Russia (1)

Keyword

Vitamin D (2)
Irinotecan (2)
Fluorouracil (2)
Nab-Paclitaxel (1)
Epacadostat (1)
IDO inhibitor (1)
MCRC (metastatic colorectal cancer) (1)
CRC (colorectal cancer) (1)
Neglected Diseases (1)
Orphan Diseases (1)
Rare Disease Research (1)
Registries (1)
Batten Disease (1)
Mucolipidosis IV (1)
Undiagnosed (1)
Uncommon Disease (1)
Hypersomnia (1)
Marinesco-Sjogren Syndrome (1)
4p-/Wolf-Hirschhorn Syndrome (1)
Wiedermann-Steiner Syndrome (1)
Hemophagocytic Lymphohistiocytosis (HLH) (1)
Behcet’s Disease (1)
Jansen metaphyseal chondrodysplasia (1)
Chronic recurrent multifocal osteomyelitis (CRMO) (1)
Hereditary Sensory and Autonomic Neuropathy (1)
Nephropathic infantile cystinosis (1)
Ocular cystinosis (1)
Spinal Bulbar Muscular Atrophy (SBMA) (1)
Mucolipidosis (1)
Mitochondrial aminoacyl-tRNA synthetases (Mt-aaRS Disorders) (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (2)

Classification

bacteria (13)
viruses (1)
fungi (1)
protozoa (1)

Modification

N6 (2)
32.056407 (1)
28.0313 (1)
4'-dihydroxyphenylalanine (1)
15.994915 (1)
N6-dimethyl-L-lysine (1)
57.021464 (1)

Study type

Transcription profiling by array (240)
RNA-seq of coding RNA (32)
Interventional (22)
Comparative genomic hybridization by array (18)
Transcription profiling by RT-PCR (14)
Unknown experiment type (8)
ChIP-seq (8)
Methylation profiling by array (7)
Other (6)
Observational (6)
ChIP-chip by tiling array (5)
Genotyping by array (4)
RNA-seq of non coding RNA (4)
Animal - High-throughput sequencing (3)
Spatial transcriptomics by high-throughput sequencing (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
MNase-seq (1)
Human - Methylation microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Observational patient registry (1)

Release Date

2022 (1689)
2021 (1685)
2023 (1569)
2025 (1497)
2024 (1436)
2020 (1334)
2019 (994)
2018 (820)
2017 (628)
2016 (475)
2015 (441)
2014 (348)
2013 (238)
2012 (208)
2026 (202)
2010 (178)
2011 (148)
2009 (124)
2008 (98)
2007 (45)
2006 (35)
2005 (23)
2004 (19)
2003 (15)
2002 (14)
2000 (14)
1999 (12)
2001 (11)
1998 (5)
1997 (1)

Location

Australia (14)
United States (7)
New Zealand (4)
Canada (3)
Spain (2)
Italy (2)
France (2)
Iran (1)
Singapore (1)
Malaysia (1)
India (1)
China (1)
Hungary (1)
Sweden (1)

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Larkinella bombi strain:IE-0392

IE-0392 Genome sequencing

PRJNA793986 | ENA

Rothia mucilaginosa strain:IE | isolate:IE

Rothia mucilaginosa strain:IE | isolate:IE Raw sequence reads

PRJNA672880 | ENA

Pediococcus pentosaceus IE-3

Pediococcus pentosaceus IE-3 Genome sequencing and assembly

PRJEA80991 | ENA

Larkinella bombi strain:IE-0392

Larkinella bombi strain:IE-0392 Genome sequencing

PRJNA793357 | ENA

Ie mouse sequencing

Robust genetic analysis of the X-linked anophthalmic (Ie) mouse

PRJEB55172 | ENA

Ie mouse sequencing

Robust genetic analysis of the X-linked anophthalmic (Ie) mouse

PRJEB55105 | ENA

Altered gene expression in the small intestine of IE-Cpr-null mice

The NADPH-cytochrome P450 reductase (CPR) is essential for the functioning of microsomal cytochrome P450 (P450) monoxygenases. The biological functions of the CPR-dependent enzymes in the intestine are not known, despite the vast knowledge available on the biochemical properties of the various oxyge...

ORGANISM(S): Mus musculus

2012-04-10 | E-GEOD-35293 | biostudies-arrayexpress

Comprehensive SWATH-MS-Based Proteomic Analysis of Rat-derived Macrophage Cell Lines Treated with iE-DAP, a NOD1 Agonist

Alveolar macrophages play a pivotal role in maintaining pulmonary homeostasis. While their primary function is the phagocytic clearance of xenobiotic substances, our recent studies have demonstrated that they also possess a mechanism for the active uptake of bacterial-derived peptides through peptid...

ORGANISM(S): Rattus norvegicus (Rat)

2026-07-04 | PXD066610 | Pride

Metabolomic profiling of cerebrospinal fluid from dogs with meningoencephalitis of unknown origin by nuclear magnetic resonance

Introduction: Meningoencephalitis of unknown origin (MUO) in dogs is a very debilitating and potentially fatal disease that is a potential model for multiple sclerosis in humans. The metabolomic profile of MUO has not been previously reported.

Objectives: To describe the metabolomic profile...

2026-03-05 | MTBLS6053 | MetaboLights

Oral microbiomes of patients with infective endocarditis (IE): a comparative pilot study of IE patients, patients at risk for IE and healthy controls.

Not available

S-EPMC9668282 | biostudies-literature

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15054 Results

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