Ifm - OmicsDI

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Transcriptomics (873)
Unknown (728)
Genomics (141)
Proteomics (125)
Metabolomics (27)

Organisms

Mus musculus (382)
Homo sapiens (353)
Rattus norvegicus (33)
Drosophila melanogaster (22)
Arabidopsis thaliana (16)
Caenorhabditis elegans (13)
Gallus gallus (13)
Saccharomyces cerevisiae (10)
Danio rerio (9)
Sus scrofa (8)
Macaca mulatta (6)
Entamoeba histolytica (6)
Salmo salar (6)
Populus tremula x Populus alba (4)
Paxillus involutus (3)
Aspergillus fumigatus (3)
Populus trichocarpa (3)
Bos taurus (3)
Hebeloma cylindrosporum (2)
Populus deltoides (2)
Aspergillus niger (2)
Solea senegalensis (2)
Streptomyces coelicolor A3(2) (2)
Schizosaccharomyces pombe (2)
Trypanosoma brucei (2)
Vitis vinifera (2)
Canis lupus familiaris (2)
Escherichia coli (2)
Candida albicans (2)
Kalanchoe daigremontiana (1)

Organisms

Drosophila melanogaster (11)
Homo sapiens (4)
Nocardia terpenica (3)
Aspergillus nishimurae (2)
Mus musculus (2)
Nocardia higoensis NBRC 100133 (1)
Nocardia niigatensis NBRC 100131 (1)
Nocardia flavorosea NBRC 108225 (1)
Nocardia asiatica NBRC 100129 (1)
Nocardia puris NBRC 108233 (1)
Nocardia concava NBRC 100430 (1)
Nocardia testacea NBRC 100365 (1)
Nocardia terpenica NBRC 100888 (1)
Nocardia araoensis NBRC 100135 (1)
Nocardia aobensis NBRC 100429 (1)
Nocardia farcinica IFM 10152 (1)
Nocardia pneumoniae NBRC 100136 (1)
Nocardia exalbida NBRC 100660 (1)
Thalassiosira oceanica CCMP1005 (1)
Madurella pseudomycetomatis (nom. inval.) (1)
Nocardia yamanashiensis NBRC 100130 (1)
Nocardia vermiculata NBRC 100427 (1)
Nocardia speluncae NBRC 108251 (1)
Nocardia sienata NBRC 100364 (1)
Aspergillus pseudoviridinutans (1)
Nocardia ninae NBRC 108245 (1)
Nocardia mexicana NBRC 108244 (1)
Nocardia shimofusensis NBRC 100134 (1)
Nocardia pseudobrasiliensis NBRC 108224 (1)
Nocardia miyunensis NBRC 108239 (1)

Repository

biostudies-arrayexpress (898)
MassIVE (82)
ENA (80)
EGA (28)
MetaboLights (25)
jPOST (20)
geo (12)
pride (11)
iProX (6)
LINCS (3)
EVA (2)
GNPS (2)
PanoramaPublic (2)
PAXDB (1)

Tissue

Heart (4)
Tendon (4)
Extracellular matrix secreting cell (1)
Cardiac muscle tissue (1)
Blood serum (1)
Blood plasma (1)
Dendritic cell (1)
Lung (1)
Epithelial cell (1)

Disease

Normal (3)
Breast adenocarcinoma (2)
Multiple myeloma (2)
HIV encephalitis (1)
Benign nevi (1)
Duchenne muscular dystrophy (1)
Mouse neuroblastoma (1)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Burkitt's lymphoma (1)
Myelolipoma (1)
Kaposi's sarcoma (1)
Mock infected (1)
Infected (1)
Tumour (1)
Colorectal carcinoma (1)
IBDV infected (1)
Pancreatic adenocarcinoma (1)
Glioblastoma multiforme (1)
Chicken Anaemia Virus infected (1)
Neuroblastoma (1)
Ciliopathy (1)
Myocardial ischemia (1)

Technology Type

Mass spectrometry (17)
Mass Spectrometry (11)
Mass spectrometry assay (8)
Shotgun proteomics (8)
MEMA (3)
Fluorescence intensity (3)
Bottom-up proteomics (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
NMR spectroscopy (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (26)
NextSeq 500 (16)
Illumina HiSeq 4000 (14)
Illumina HiSeq 2500 (13)
Illumina HiSeq 2000 (8)
Axon GenePix 4000A scanning hardware (5)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Scanning hardware (3)
NextSeq 550 (3)
BD ARIA II Cell Sorter (2)
GeneChip Scanner 3000 7G (2)
ScanArray 5000 [PerkinElmer] (2)
Illumina NovaSeq X (2)
NextSeq 2000 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
ShARC (1)
Agilent 2100 (1)
AutoMACS (1)
Illumina HiSEq 2500 (1)
AB SOLiD 4 System (1)
428 [Affymetrix] (1)
Unix (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
G2565BA DNA microarray scanner [Agilent] (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq X (1)
DNBSEQ-G400 (1)

Publication Date

2010 (121)
2014 (105)
2011 (104)
2015 (94)
2013 (90)
2012 (69)
2008 (58)
2016 (49)
2007 (43)
2023 (40)
2009 (38)
2024 (37)
2022 (34)
2020 (30)
2025 (28)
2021 (23)
2026 (21)
2019 (17)
2018 (17)
2006 (17)
2017 (13)
2005 (9)
2004 (1)

UNIPROT ID/AC

YORR_BACSU (1)
RHAB_BACSU (1)
YAAI_BACSU (1)
CBP1_BACSU (1)
YHFQ_BACSU (1)
ILVA_BACSU (1)
COTA_BACSU (1)
SP0J_BACSU (1)
LEPU_BACSU (1)
NIN_BACSU (1)
YWMC_BACSU (1)
YHCG_BACSU (1)
YOAV_BACSU (1)
YDZF_BACSU (1)
GLSA2_BACSU (1)
EX7L_BACSU (1)
NATR_BACSU (1)
YKUK_BACSU (1)
YXIB_BACSU (1)
YUKD_BACSU (1)
YHFS_BACSU (1)
YYAT_BACSU (1)
YIZA_BACSU (1)
GLXK_BACSU (1)
CIDA_BACSU (1)
YPUF_BACSU (1)
GUB_BACSU (1)
PSPA_BACSU (1)
YDBS_BACSU (1)
FLHP_BACSU (1)

CHEBI ID

CHEBI:27897 (4)
CHEBI:17724 (3)
CHEBI:30763 (3)
CHEBI:48131 (3)
CHEBI:27248 (3)
CHEBI:17012 (3)
CHEBI:7916 (3)
CHEBI:17509 (3)
CHEBI:30769 (3)
CHEBI:15354 (3)
CHEBI:16704 (3)
CHEBI:16040 (3)
CHEBI:16761 (3)
CHEBI:16737 (3)
CHEBI:17368 (3)
CHEBI:26271 (3)
CHEBI:25682 (2)
CHEBI:22469 (2)
CHEBI:87432 (2)
CHEBI:16814 (2)
CHEBI:50025 (2)
CHEBI:28946 (2)
CHEBI:17626 (2)
CHEBI:70989 (2)
CHEBI:25858 (2)
CHEBI:17700 (2)
CHEBI:16269 (2)
CHEBI:28768 (2)
CHEBI:82912 (2)
CHEBI:18243 (2)

Metabolite Name

Leucine (6)
Cytosine (6)
Adenosine (6)
Cytidine (6)
P-Cymene (5)
Lithocholic acid (5)
4-Hydroxybenzoic acid (5)
Pantothenic acid (5)
Indole (5)
Deoxycholic acid (5)
Glycocholic acid (5)
Tetradecanedioic acid (5)
Phenylalanine (5)
Oleic acid (5)
Linoleic acid (5)
Hexadecanedioic acid (5)
Dodecanedioic acid (5)
Uracil (5)
Adenine (5)
Chenodeoxycholic acid (4)
Anserine (4)
Trigonelline (4)
Mitoxantrone (4)
Ursodeoxycholic acid (4)
Thymine (4)
1-Methyladenosine (4)
Kynurenic acid (4)
Phytosphingosine (4)
1,11-Undecanedicarboxylic acid (4)
Allantoin (4)

First Public Date

2013 (39)
2025 (6)
2023 (6)
2024 (5)
2021 (5)
2014 (5)
2015 (4)
2022 (3)
2020 (2)
2018 (2)
2016 (2)
2019 (1)

Classification

fungi (9)
bacteria (3)

Study type

Transcription profiling by array (629)
RNA-seq of coding RNA (97)
ChIP-seq (27)
RNA-seq of coding RNA from single cells (25)
Unknown experiment type (24)
Transcription profiling by RT-PCR (19)
RNA-seq of non coding RNA (9)
Other (8)
Transcription profiling by tiling array (7)
Comparative genomic hybridization by array (6)
ChIP-chip by tiling array (5)
Methylation profiling by array (5)
Transcription profiling by SAGE (4)
DNA-seq (4)
Cell line - High-throughput sequencing (3)
Proteomic profiling by array (3)
Animal - One-color microarray (2)
ChIP-chip by array (2)
Genotyping by array (2)
RNA-seq of total RNA (2)
Differential (1)
MicroRNA profiling by high-throughput sequencing (1)
Animal - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Bisulfite-seq (1)
ATAC-seq (1)
ScATAC-seq (1)

Release Date

2010 (132)
2014 (125)
2015 (124)
2011 (119)
2013 (101)
2012 (85)
2025 (79)
2016 (79)
2023 (78)
2022 (77)
2024 (75)
2021 (75)
2008 (67)
2020 (65)
2019 (63)
2018 (62)
2009 (50)
2017 (49)
2007 (48)
2026 (27)
2006 (21)
2005 (14)
2004 (4)
2003 (2)
2001 (1)
1998 (1)

Lab affiliation

Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, and Department of Cardiothoracic Surgery, Jena University Hospital, Jena, Germany (2)
Institute of Ageing and Chronic Disease, Musculoskeletal Biology I University of Liverpool UK (1)
Institute of Bioengineering, School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London, E1 4NS, UK (1)
Translational Metabolic Laboratory, Radboudumc, Nijmegen, The Netherlands (1)
Comparative Biomedical Sciences Royal Veterinary College Royal College Street London NW1 0TU (1)
Discovery Proteomics Facility University of Oxford (1)
Translational Metabolic Laboratory, Department of Human Genetics, Radboudumc, Nijmegen, The Netherlands (1)
VCU Health, Department of Internal Medicine Division of Cardiology (1)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls-University Tuebingen (1)
Institute of Bioengineering, School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London, E1 4NS. (1)

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Nocardia terpenica strain:IFM 0706

Nocardia terpenica IFM 0706

PRJNA634386 | ENA

Equine energy-storing SDFT tendon development, Proteomic analysis of IFM and fascicles through development

ORGANISM(S): Equus caballus (Horse)

2021-09-08 | PXD012169 | Pride

Nocardia terpenica strain:IFM 0406

Nocardia terpenica strain:IFM 0406 Genome sequencing and assembly

PRJNA309225 | ENA

Indirect Flight Muscle (IFM) expression profiling of actin and myosin nulls in Drosophila melanogaster

Expression profiling of IFMs from 1-2 day old adult male flies of 3 genotypes: Canton-S, IFM-specific actin null (Act88FKM88) and IFM-specific myosin null (Mhc7). Results provide insight into how muscles respond to the absence of major scaffold proteins, and whether these transcriptional responses a...

ORGANISM(S): Drosophila melanogaster

2015-06-25 | E-GEOD-70252 | biostudies-arrayexpress

Nocardia brasiliensis IFM 10847

Nocardia brasiliensis IFM 10847 genome sequencing project

PRJDB1474 | ENA

Nocardia otitidiscaviarum IFM 11049

Nocardia otitidiscaviarum IFM 11049 genome sequencing project

PRJDB1473 | ENA

Madurella fahalii strain:IFM 68171

Genome sequence of Madurella fahalii IFM 68171

PRJDB18757 | ENA

Madurella pseudomycetomatis (nom. inval.) strain:IFM 46460

Genome sequence of Madurella pseudomycetomatis IFM 46460

PRJDB35632 | ENA

Structure-function Relationships in Human Tendons: Interfascicular Matrix Specialisation in the Achilles Tendon C4PR_LIV

Tendon is a highly aligned connective tissue, in which the macro-structure consists of collagen-rich fascicles surrounded by interfascicular matrix (IFM). In a series of recent studies in equine tissue, we have demonstrated specialisation of tendon composition, structure and mechanics to achieve the...

ORGANISM(S): Homo sapiens (Human)

2020-11-11 | PXD018212 | Pride

Structure-function Fascicles interfascicularmatrix mechanical testing mass spectrometry ageing

Aspergillus pseudoviridinutans strain:IFM 55266 T

Aspergillus pseudoviridinutans IFM 55266 T

PRJDB7449 | ENA

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1897 Results

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