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TranscriptomicsTranscriptional response of Escherichia coli O157:H7 to cinnamaldehyde
Cinnamaldehyde is a natural antimicrobial and has been found to be effective against many foodborne pathogens including Escherichia coli O157:H7. Although its antimicrobial effects have been well investigated, limited information is available on its effects at the molecular level. Sublethal treatmen...
ORGANISM(S): Escherichia coli O157:H7 
2012-09-08 | E-GEOD-40693 | biostudies-arrayexpress
MetabolomicsDoes Storage Post Sampling Influence the Stability of Sebum when used for Mass Spectrometry Metabolomics Analysis?

Sebum is a biofluid excreted by sebaceous glands in the skin. In recent years sebum has been shown to contain endogenous metabolites diagnostic of disease, with remarkable results for Parkinson’s Disease. Given that sebum sampling is facile and non-invasive, its potential for use in clinical bioc...

2025-07-15 | MTBLS7946 | MetaboLights
TranscriptomicsTranscriptional profiling of E. coli K-12 and E. coli O157 (Sakai) following heat shock at 45 degree celsius
Escherichia coli O157 presents a number of specific problems in terms of food safety and public health. It has been found that E. coli O157 is more resistant to a number of the stresses encountered during food production such as heat, pH and osmotic shock. This greater resistance is thought to contr...
ORGANISM(S): Escherichia coli 
2018-03-20 | E-MTAB-5912 | biostudies-arrayexpress
ProteomicsUPS1 and UPS2 proteins diluted in E. coli
This dataset derives from experiments testing quantitation using label-free methods. We used the Sigma-Aldrich UPS1 and UPS2 protein standard sets, containing proteins of 6-83 kD; the UPS1 set includes 49 human proteins at a single molar concentration, while the UPS2 set includes six groups of eight...
ORGANISM(S): Escherichia coli 
2013-12-05 | PXD000602 | Pride
Ups2 Standards E. coli Ups1 
ProteomicsAP-MS analysis of CobB interactions in E. coli
Sirtuins are an essential family of nicotinamide adenine dinucleotide (NAD)-dependent enzymes, conserved from bacteria to humans. Here we study the bacterial sirtuin CobB in E. coli. To demonstrate its highly conserved enzymatic activities and substrates, we used proteomics to define CobB protein ...
ORGANISM(S): Escherichia coli 
2017-10-04 | PXD007864 | Pride
Protein interactions Sirtuin Orbitrap 
TranscriptomicsWhole blood transcriptome analysis during immunization and mammary challenge with E. coli
Methods: During the last trimester of the gestation, 12 heifers were immunized using intramuscular injection with heat-killed E. coli P4 emulsified in Montanide ISA 61VG® oil adjuvant (SEPPIC), as recommended by the manufacturer. Two months later, half of the heifers (IM group, n=6) got a second inj...
ORGANISM(S): Bos taurus 
2020-12-07 | GSE159286 | GEO
ProteomicsMSE vs IM-MSE comparison - The experiment was conducted to compare the MSE and IM-MSE acquisiton modes
The experiment was conducted to compare the MSE and IM-MSE acquisiton modes as well as to find the optimal on column loading. This was done using 1DLC and cytosolic e coli digest.Raw data were processed and searched using Proteinlynx Global Server version 3.0. The following parameters were used to g...
ORGANISM(S): Escherichia coli 
2013-02-18 | PXD000150 | Pride
E coli Mse Lc-ms/ms 
UnknownE-cadherin: A determinant molecule associated with ovarian cancer progression, dissemination and aggressiveness.
Not available
S-EPMC5608212 | biostudies-literature
TranscriptomicsmicroRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
microRNAs (miRNAs), a class of small non-coding RNAs, are key regulators of gene expression at post-transcriptional level and play essential roles in fundamental biological processes such as development and metabolism. Here, we perform a comprehensive analysis of miRNAs in the zoonotic parasite E. c...
ORGANISM(S): Echinococcus granulosus 
2015-02-09 | E-GEOD-64705 | biostudies-arrayexpress
GenomicsWhole blood transcriptome analysis during immunization and mammary challenge with E. coli
Whole blood transcriptome analysis during immunization and mammary challenge with E. coli
PRJNA668296 | ENA
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