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ProteomicsMass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset)
The spatial distribution of phospholipids in a tissue section of mouse urinary bladder was analyzed by MALDI MS imaging at 10 micrometer pixel size with high mass resolution (using an LTQ Orbitrap mass spectrometer).
ORGANISM(S): Mus musculus (Mouse) 
2014-11-19 | PXD001283 | Pride
Tissue imaging Imzml Phospholipids Mass spectrometry imaging Mouse urinary bladder 
ProteomicsMALDI rat liver anticancer drug spiked-in dataset (imzML)
For the MALDI-MSI experiment, we selected 12 different drugs. The drugs were purchased from the LC Laboratories (Woburn, MA; CAS numbers: dabrafenib: 1195765-45-7, dasatinib: 302962-49-8, erlotinib: 183321-74-6, gefitinib: 184475-35-2, imatinib: 152459-95-5, lapatinib: 388082-78-8, pazopanib: 444731...
ORGANISM(S): Rattus norvegicus (Rat) 
2019-11-06 | PXD016146 | Pride
Imzml ground truth spiked-in drugs 
Metabolomics3D DESI mass spectrometry imaging of 52 serial sections from a human colorectal adenocarcinoma
Fifty-two serial sections from a single human adenocarcinama are made available in this dataset. Four neighbouring sections were placed on a single slide and analysed together. The tissue sections were analysed by desorption electrospray ionisation mass spectrometry imaging (DESI-MSI) according to t...
2017-03-21 | MTBLS415 | MetaboLights
Metabolomics3D DESI mass spectrometry imaging of 51 serial sections from a human liver metastasis
51 serial sections from a single human liver metastasis are made available in this dataset. Four neighbouring sections were placed on a single slide and analysed together. The tissue sections were analysed by desorption electrospray ionisation mass spectrometry imaging (DESI-MSI) according to the pr...
2016-04-28 | MTBLS282 | MetaboLights
UnknownRaman2imzML converts Raman imaging data into the standard mass spectrometry imaging format.
Not available
S-EPMC7547406 | biostudies-literature
MetabolomicsAnalysis of colorectal adenocarcinoma tissue samples by DESI mass spectrometry imaging
Ex vivo colorectal adenocarcinoma samples were analysed by desorption electrospray ionisation using an Orbitrap mass spectrometer. The samples were analysed in negative mode over the m/z range 600-1000. Some of the samples presented in this dataset were analysed as part of [1]. The study makes avail...
2016-04-28 | MTBLS289 | MetaboLights
OtherTIMSCONVERT_Raw_Data_LC-TIMS-MS/MS_MALDI-TIMS-qTOF-DD_MAALDI-TIMS-qTOF-IMS
Raw data and data converted to open source data formats (mzML, imzML) incorporating ion mobility data using TIMSCONVERT workflow.
ORGANISM(S): Penicillium Atramentosum (ncbitaxon:36652) Vibrio Cholerae O1 Biovar El Tor (ncbitaxon:686) 
2021-11-23 | MSV000088438 | MassIVE
UnknownCorrelative mass spectrometry imaging, applying time-of-flight secondary ion mass spectrometry and atmospheric pressure matrix-assisted laser desorption/ionization to a single tissue section.
Not available
S-EPMC5838509 | biostudies-literature
ProteomicsSpatial Metabolomics Reveals Unique Chemical Responses of an Invasive Fungus in the Cheese Rind Microbiome - MSI DATA
Raw and imzML files used to generate Figures 2 and 3. This MSI data was generated from bacterial and fungal monocultures and their interactions.
ORGANISM(S): Aspergillus Westerdijkiae (ncbitaxon:357447) Staphylococcus Equorum (ncbitaxon:246432) Brachybacterium Alimentarium (ncbitaxon:47845) 
2025-08-14 | MSV000098830 | MassIVE
UnknownTIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats.
Not available
S-EPMC9991885 | biostudies-literature
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