Invasive fungal infections

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Unknown (1165)
Genomics (85)
Transcriptomics (67)
Proteomics (20)
Metabolomics (4)
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Other (1)

Organisms

Candida albicans (18)
Mus musculus (15)
Bombyx mori (15)
Onchocerca volvulus (15)
Klebsiella pneumoniae (15)
Musca domestica (15)
Brugia malayi (15)
Schizosaccharomyces pombe (15)
Cnidaria (15)
Streptomyces coelicolor A3(2) (15)
Sus scrofa (15)
Human immunodeficiency virus 1 (15)
Aspergillus fumigatus (12)
Homo sapiens (9)
Candidozyma auris (5)
Oryza sativa (4)
Arabidopsis thaliana (2)
Fusarium oxysporum (2)
Aspergillus fumigatus Af293 (2)
Anaxyrus boreas (1)
Talaromyces marneffei (1)
Batrachochytrium dendrobatidis JAM81 (1)
Bemisia tabaci (1)
Saccharomyces cerevisiae (1)
Fusarium solani (1)
Cryptococcus neoformans H99 (1)
Pyricularia oryzae (1)
Saccharomyces cerevisiae S288C (1)
Cryptococcus neoformans (1)
fungal sp. NT-01 (1)

Organisms

Mus musculus (10)
Candida albicans (9)
Aspergillus fumigatus (6)
Candidozyma auris (5)
Homo sapiens (4)
Nakaseomyces glabratus (2)
Saccharomyces cerevisiae S288C (2)
Fusarium (1)
Trichosporon austroamericanum (1)
Cryptococcus neoformans H99 (1)
Cryptococcus neoformans (1)
Diutina catenulata (1)
Granulibacter bethesdensis (1)
Myotis lucifugus (1)
human gut metagenome (1)

Repository

ENA (80)
biostudies-arrayexpress (37)
geo (35)
pride (15)
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EGA (1)

Tissue

Cell culture (2)
Response to fungus (1)
Culture condition:yeast extract-grown cell (1)
Conidium (1)
Extracellular membrane-bounded organelle (1)
Defense response to fungus (1)
Yeast (1)
Fungal cell (1)
Peripheral blood mononuclear cell (1)
Macrophage (1)
Whole body (1)
Neutrophil (1)
Blood (1)

Disease

Cryptococcosis (2)
Normal (1)
Fungal infectious disease (1)
Candidiasis (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (7)
Mass spectrometry (4)
Bottom-up proteomics (4)
Data-dependent acquisition (2)
Illumina HiSeq 2500 (1)
SWATH MS (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Geniom RT Analyzer (1)
Geniom (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

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2025 (12)
2014 (8)
2024 (7)
2015 (6)
2019 (5)
2016 (5)
2013 (5)
2010 (5)
2021 (5)
2011 (4)
2012 (3)
2008 (3)
2023 (3)
2017 (2)
2009 (2)
2005 (2)
2007 (1)
2022 (1)
2020 (1)

CHEBI ID

CHEBI:24041 (2)
CHEBI:25523 (2)
CHEBI:17552 (2)
CHEBI:17345 (2)
CHEBI:13389 (2)
CHEBI:78682 (2)
CHEBI:44897 (2)
CHEBI:192672 (1)
CHEBI:192668 (1)
CHEBI:192663 (1)
CHEBI:164184 (1)
CHEBI:160379 (1)
CHEBI:192659 (1)
CHEBI:192658 (1)
CHEBI:192654 (1)
CHEBI:158305 (1)
CHEBI:192653 (1)
CHEBI:84880 (1)
CHEBI:161806 (1)
CHEBI:161576 (1)
CHEBI:192649 (1)
CHEBI:192644 (1)
CHEBI:166105 (1)
CHEBI:192643 (1)
CHEBI:163710 (1)
CHEBI:160333 (1)
CHEBI:143344 (1)
CHEBI:192641 (1)
CHEBI:165142 (1)
CHEBI:164029 (1)

Metabolite Name

D-Fructose 1,6-bisphosphate (2)
Succinyl coenzyme A (Succinyl-CoA) (1)
18-alpha-Glycyrrhetinic acid (1)
Lysopc 16:2 (1)
8(R)-Hydroxy-(5Z,9E,11Z,14Z)-eicosatetraenoic acid (1)
2,3-Dinor-11alpha-prostaglandin F2alpha (1)
3,3-dimethyl-1-[4-(trifluoromethoxy)phenyl]piperidine-2,6-dione (1)
Ethyl 2-cyano-3-[(2-oxoazepan-3-yl)amino]acrylate (1)
3,4-Methylenedioxy-¦Á-pyrrolidinopropiophenone (1)
PC (8:0/8:0) (1)
5-Aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5-monophosphate (1)
Trans-delta-2-11-Methyl-dodecenoic acid (1)
N1-[2-oxo-6-(1H-pyrrol-1-yl)-2H-chromen-3-yl]acetamide (1)
6alpha-Naltrexol (1)
17alpha-Methyl-androstan-3-hydroxyimine-17alpha-ol (1)
N-[5-(tert-butyl)-3-isoxazolyl]-N'-[2-(trifluoromethoxy)phenyl]urea (1)
DAG (16:0/18:1) (1)
GDP-D-mannose (1)
N'1-(4-chlorobenzoyl)-2-aminobenzene-1-carbohydrazide (1)
7-Aminoclonazepam(-d4) (1)
3-(2-chloroanilino)-3-(methylthio)-1-phenylprop-2-en-1-one (1)
3-(4,5-diphenyl-1,3-oxazol-2-yl)propanoic acid (1)
Ethyl 5-amino-1-thieno[2,3-d]pyrimidin-4-yl-1H-4-pyrazolecarboxylate (1)
6-O-(2-Methylbutanoyl)-alpha-D-glucopyranosyl-alpha-D-glucopyranoside (1)
3,4,5-Trimethoxyphenyl 6-O-pentopyranosyl-alpha-D-glucopyranoside (1)
Alpha-Linolenic acid ethyl ester (1)
4-(4-hydroxy-3-methoxyphenyl)butan-2-one oxime (1)
Glycohyocholic acid (Sodium salt) (1)
4-Methylumbelliferyl-alpha-D-glucopyranoside (1)
Methyl 1-isopropyl-1H-1,2,3-benzotriazole-5-carboxylate (1)

First Public Date

2026 (17)
2025 (17)
2024 (11)
2013 (5)
2021 (4)
2018 (4)
2017 (4)
2014 (4)
2023 (3)
2022 (3)
2016 (3)
2019 (2)
2015 (2)
2020 (1)

Classification

fungi (26)

Study type

Transcription profiling by array (23)
RNA-seq of coding RNA (7)
Comparative genomic hybridization by array (3)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (148)
2025 (137)
2022 (127)
2024 (123)
2020 (120)
2021 (116)
2019 (74)
2018 (70)
2016 (48)
2015 (43)
2017 (42)
2014 (35)
2013 (26)
2011 (19)
2026 (17)
2012 (13)
2010 (11)
2009 (8)
2008 (8)
2005 (6)
2007 (5)
2006 (3)
2004 (3)

Lab affiliation

Molecular and Cellular Biology, University of Guelph, Canada (2)
State Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan 430079, China. (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (Leibniz-HKI) Jena (1)
Department of Biology, Maynooth University, Co. Kildare, Ireland (1)
Institute for Microbiology, Friedrich Schiller University, Jena, Germany and Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product and Infection Biology (HKI), Hans Knöll Institute, Jena, Germany (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (Leibniz-HKI), Jena, Germany (1)
Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Adolf-Reichwein-Str. 23, 07745, Jena, Germany (1)
Intercollegiate Faculty of Biotechnology University of Gdansk Poland (1)
Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (1)
University of Guelph (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology / Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (1)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (1)
Medical Mycology Laboratory, Department of Biology, Maynooth University, Co. Kildare, Ireland. (1)
Jinan University (1)

Tags

pathogen:fungus (26)
pathogen (26)

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Transcriptional profiling and comparative genomic analysis of an invasive and non-invasive strain of Candida albicans

Invasion of host tissue by the human fungal pathogen, Candida albicans is an important step during many forms of candidosis. However, not all C. albicans strains possess the same invasive and virulence properties. It is known for example that the two clinical isolates SC5314 and ATCC10231 differ in ...

ORGANISM(S): Candida albicans

2010-05-26 | E-GEOD-10689 | biostudies-arrayexpress

Effect of amphotericin B on Aspergillus fumigatus

Amphotericin B (AMB) is the most widely used polyene antifungal drug for the treatment of systemic fungal infections including invasive aspergillosis. We aimed to understand molecular targets of AMB in Aspergillus fumigatus (Afu) by genomic approaches. Amphotericin B (AMB) is the most widely used p...

ORGANISM(S): Aspergillus fumigatus

2010-05-26 | E-GEOD-10505 | biostudies-arrayexpress

Transcriptional profiling of ATCC46645 strain and isogenic M-NM-^TpacC Aspergillus fumigatus mutant during murine infection

In lung diseases caused by the major mould pathogen Aspergillus fumigatus the pulmonary epithelium is destroyed by invasive growth of fungal hyphae, a process thought to require fungal proteases. Here we show that the A. fumigatus pH-responsive transcription factor PacC governs expression of secrete...

ORGANISM(S): Aspergillus fumigatus

2014-10-20 | E-GEOD-54810 | biostudies-arrayexpress

Vaccines for invasive fungal infections.

Not available

S-EPMC3155210 | biostudies-literature

Voriconazole for secondary prophylaxis of invasive fungal infections in allogeneic stem cell transplant recipients: results of the VOSIFI study.

Not available

S-EPMC2948103 | biostudies-literature

Invasive Fungal Infections: The Early Killer after Liver Transplantation.

Not available

S-EPMC10301215 | biostudies-literature

Granulocyte transfusions in the management of invasive fungal infections.