Iron. - OmicsDI

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Disease

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Technology Type

Mass Spectrometry (643)
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SWATH MS (23)
ESI (16)
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SRM/MRM (10)
HDMSE (7)
MSE (5)
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NMR spectroscopy (3)
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ILLUMINA, Illumina HiSeq 2500 (1)
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Illumina HiSeq 2500 (1)
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Instrument Platform

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Publication Date

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2001 (1)

UNIPROT ID/AC

Q9EQ21 (7)
Q921I1 (7)
Q9NP59 (3)
P21399 (3)
Q30201 (2)
Q9UP52 (2)
P09601 (2)
P81172 (2)
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P47158 (1)
Q12425 (1)
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P38523 (1)
P53193 (1)
Q05931 (1)
Q6Q560 (1)
P25374 (1)
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P32860 (1)
Q08907 (1)
Q08906 (1)

CHEBI ID

CHEBI:24875 (10)
CHEBI:29034 (8)
CHEBI:18248 (4)
CHEBI:192761 (3)
CHEBI:29033 (3)
CHEBI:82594 (2)
CHEBI:60652 (1)
CHEBI:64481 (1)
CHEBI:57562 (1)
CHEBI:26739 (1)
CHEBI:5019 (1)
CHEBI:5044 (1)
CHEBI:52381 (1)
CHEBI:53027 (1)
CHEBI:53026 (1)
CHEBI:52385 (1)
CHEBI:52384 (1)
CHEBI:52378 (1)
CHEBI:52377 (1)
CHEBI:52383 (1)
CHEBI:52382 (1)
CHEBI:52380 (1)
CHEBI:52379 (1)
CHEBI:52376 (1)
CHEBI:52375 (1)
CHEBI:18386 (1)
CHEBI:52389 (1)
CHEBI:52615 (1)
CHEBI:52388 (1)
CHEBI:49050 (1)

Metabolite Name

Creatine (36)
Inosine (34)
Hypoxanthine (33)
Adenosine (32)
Uracil (29)
Xanthine (29)
Creatinine (29)
Taurine (28)
L-Glutamine (28)
Guanosine (28)
Uridine (27)
L-Phenylalanine (27)
L-Histidine (26)
L-Tyrosine (26)
Adenine (25)
Thymidine (25)
Choline (24)
Xanthosine (24)
Guanine (24)
Thymine (23)
Succinic acid (23)
Betaine (22)
Citrulline (22)
L-Arginine (22)
Uric acid (22)
Pantothenic acid (21)
L-Proline (21)
Citric acid (21)
Azelaic acid (21)
Cytidine (21)

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2013 (219)
2017 (172)
2018 (155)
2016 (133)
2015 (120)
2011 (3)
2012 (2)

Modelling Approach

Ordinary differential equation model (17)
Differential equation model (2)
Constraint-based model (2)

Study status

Completed (21)
Recruiting (7)
Not provided (4)
Ongoing (3)
Not yet recruiting (3)
Terminated (1)
Withdrawn (1)
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Lab affiliation

Ruhr University Bochum, Germany (10)
Moffitt Cancer Center (8)
Moffitt Cancer Center Tampa, FL, USA (5)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China (4)
LPHI, Univ Montpellier, CNRS, INSERM, Montpellier, France (4)
Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada (3)
International Institute of Molecular and Cell Biology in Warsaw, Poland (3)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (3)
UCSF (3)
Univ. Bordeaux, Bordeaux Proteome, Bordeaux, France. (3)
University of Washington, Department of Genome Sciences (3)
Bioplatforms Australia (2)
CNRS, University of Strasbourg, UMR7242, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, Strasbourg, France (2)
Department of Biochemistry University of Wisconsin-Madison (2)
Department of Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Department of Molecular Biosciences, University of South Florida, Tampa, FL, USA Center for Antimicrobial Resistance, University of South Florida, Tampa, FL, USA (2)
Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (2)
ETH Zurich (2)
FeROS, BPMP, INRA (2)
Hohai University (2)
Institut de Genetique et de Biologie Moleculaire et Cellulaire, Illkirch Cedex, FRANCE (2)
Institute of Biotechnology, University of Helsinki (2)
Instituto de Bioingeniería, Universidad Miguel Hernández, 03202 Elche, SPAIN (2)
Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 58 Abrahama St., 80-307 Gdansk, Poland (2)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (2)
Laboratoire de Spectrometrie de Masse BioOrganique (LSMBO), Universite de Strasbourg, CNRS, IPHC UMR 7178, 67087 Strasbourg, France (2)
MRC Centre for Medical Mycology University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter EX4 4QD, UK (2)
Max Planck Institute for the Science of Human History (2)
Michael Smith Laboratories, University of British Columbia, Canada (2)
Molecular and Cellular Biology Department, University of Guelph, 50 Stone Rd. E. Guelph, Ontario, Canada, N1G 2W1 (2)

Keyword

Iron (5)
Ferinject (4)
Iron isomaltoside 1000 (3)
Monofer (2)
Blood Transfusion (2)
Preoperative care (2)
Postoperative care (2)
Hematinics (2)
Hepcidin (2)
Postoperative complications (2)
Perioperative care (2)
Colorectal surgery (2)
Carbon Nanoparticle-Loaded Iron (1)
Ferroptosis (1)
Dose Limited Toxicity (1)
Intravenous Iron Therapy (1)
Transfusion (1)
Patient Blood Management (1)
Ferrous fumarate (1)
Ferrofumarate (1)
Deferasirox (1)
IDA (1)
Iron deficiency anemia and who are intolerant or unresponsive to oral iron therapy (1)
IRON SUCROSE (1)
FERROUS SULFATE (1)
Ferro sanol duodenal (1)
Ferric carboxymaltose (1)
Iron-deficiency anemia (1)
Intravenous iron (1)
Ferric maltol (1)

IsPrivate

False (23)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (2)
Not Peer Reviewed (1)

Classification

bacteria (386)
fungi (101)
protozoa (10)
helminths (1)
viruses (1)

Modification

Not available (2)
+3amu) (1)
0.9840160012245178 (1)
15.994915008544922 (1)
57.02146530151367 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (4069)
RNA-seq of coding RNA (785)
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ChIP-chip by array (19)
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RNA-seq of coding RNA from single cells (15)
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1997 (17)

Location

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Transcription profiling of rat duodenal samples at different developmental stages and the effects of iron-deficiency

The effect of iron-deficiency on duodenal gene expression was investigated in rats at different developmental stages.

ORGANISM(S): Rattus norvegicus

2007-09-15 | E-GEOD-1892 | biostudies-arrayexpress

Bordetella bronchiseptica RB50 iron limitation 2

Bordetella bronchiseptica RB50 was shifted from iron replete to either iron depleted or iron replete media, and samples were taken post shift for transcriptional profiling

ORGANISM(S): Bordetella bronchiseptica

2011-09-08 | E-MEXP-3076 | biostudies-arrayexpress

Bordetella pertussis Tohama I iron limitation 1

B. pertussis Tohama I was grown in iron-depleted or iron-replete media and sampled at several time points to assess global gene expression

ORGANISM(S): Bordetella pertussis

2011-09-08 | E-MEXP-3263 | biostudies-arrayexpress

Iron regulation in P. syringae DC3000

DC3000 cultures were grown under highly controlled conditions and after the addition of iron citrate or sodium citrate to the media. In the cultures supplemented with iron, we found that cell-associated iron increased rapidly while culture densities were not significantly different over 4 hours when...

ORGANISM(S): Pseudomonas syringae pv. tomato str. DC3000

2008-11-07 | E-GEOD-13500 | biostudies-arrayexpress

Transcription profiling of Mycobacterium tuberculosis wild type, ideR mutant and ideR complemented mutants strains grown in iron-sufficient or iron-deficient media

The mycobacterial IdeR protein is a metal-dependent regulator of the DtxR (diphtheria toxin repressor) family. In the presence of iron, it binds to a specific DNA sequence in the promoter regions of the genes that it regulates, thus controlling their transcription. In this study, we provide evidence...

ORGANISM(S): Mycobacterium tuberculosis

2007-09-12 | E-TABM-317 | biostudies-arrayexpress

Neisseria gonorrhoeae FA1090 transcriptional response to iron availability

4 pan-Neisseria arrays examining the gonococcal response to iron availability. Dual channel (Cy3/Cy5) arrays, using random nonamers for cDNA generation. Arrays scanned with ScanArray ExpressHT microarray scanner. Data analyzed using ArrayVision 7.0 and compiled in GeneSpring.

ORGANISM(S): Neisseria gonorrhoeae

2010-06-09 | E-GEOD-2147 | biostudies-arrayexpress

Role of IdeR in Iron-Dependent Gene Expression, Iron Metabolism, and Oxidative Stress Response

ORGANISM(S): Mycobacterium tuberculosis

2007-08-08 | E-GEOD-8732 | biostudies-arrayexpress

Transcription profiling of human CaCo-2 cells following various iron treatments

We investigated transcriptional response of CaCo-2 cells to iron treatments, we studied hemin effect by adding hemin to DMEM-FBS medium and iron deficiency effects in using an iron free medium compared to the same supplemented with FAC (ferric ammonium citrate). Experiment Overall Design: Biologica...

ORGANISM(S): Homo sapiens

2008-01-19 | E-GEOD-3573 | biostudies-arrayexpress

Transcription profiling of Bacillus anthracis Sterne during iron starvation

Effects of iron starvation on the transcriptional profile of Bacillus anthracis

ORGANISM(S): Bacillus anthracis

2010-07-22 | E-MEXP-2272 | biostudies-arrayexpress

Expression data from Arabidopsis roots and shoots grown with or without iron

Iron-deficiency repsonses in Arabidopsis are controlled by several bHLH transcription factors. FIT, for example has been shown to direct iron-uptake responses. However, the role of shoot and root expressed genes bHLH100 and bHLH101 has not be clarified. We used microarray to study what genes migh...

ORGANISM(S): Arabidopsis thaliana

2012-09-30 | E-GEOD-40076 | biostudies-arrayexpress

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