Jacob S S - OmicsDI

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Unknown (2500)
Proteomics (201)
Transcriptomics (153)
Genomics (50)
Metabolomics (42)
Models (32)
Other (3)
Multiomics (3)
Genomic (2)

Organisms

Homo sapiens (243)
Mus musculus (65)
Rattus norvegicus (14)
Drosophila melanogaster (10)
Caenorhabditis elegans (5)
Pimephales promelas (4)
Arabidopsis thaliana (4)
Saccharomyces cerevisiae (4)
Pseudomonas [fluorescens] SBW25 (4)
Rattus rattus (3)
cellular organisms (3)
Pseudomonas fluorescens (3)
Anopheles funestus (3)
Danio rerio (3)
Pseudomonas aeruginosa PAO1 (3)
Zea mays (3)
Candida albicans (2)
Spalax carmeli (1)
Nannospalax galili (1)
Carassius auratus (1)
Tetrahymena thermophila (1)
Macaca nemestrina (1)
Catharanthus roseus (1)
Macaca mulatta (1)
Daphnia magna (1)
Medicago truncatula (1)
Schizosaccharomyces pombe (1)
Mycobacterium tuberculosis (1)
Bacteria (1)
Bordetella bronchiseptica (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (176)
PeptideAtlas (72)
pride (68)
MassIVE (48)
MetaboLights (37)
BioModels (32)
EGA (27)
PanoramaPublic (7)
GNPS (5)
jPOST (5)
dbGaP (2)
GPMDB (2)
ENA (2)
geo (1)

Tissue

Breast (72)
Cell culture (22)
Lung (6)
Brain (4)
Liver (4)
Blood (3)
Blood plasma (3)
Cell suspension culture (3)
Epithelial cell (3)
Heart (3)
Leaf (3)
Nerve cord (3)
Blood cell (2)
Hepatocyte (2)
Permanent cell line cell (2)
Adipose tissue (1)
B cell (1)
Bone marrow (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cardiac muscle cell (1)
Cell line cell (1)
Circulating cell (1)
Embryo (1)
Endometrial microvascular endothelial cells (1)
Epithelial cell of lung (1)
Glioblast (1)
Leukocyte (1)
Lymph (1)
Lymphocyte (1)

Disease

Breast Carcinoma (36)
Acute leukemia (3)
Breast cancer (3)
Fatty liver disease (3)
Post-traumatic stress disorder (3)
Not Available (2)
Acquired metabolic disease (2)
Disease free (2)
Lung cancer (2)
Malignant neoplasm of ovary (2)
Metabolic dysfunction-associated steatotic liver disease (2)
Normal (1)
Alzheimer's disease (1)
Aortic valve stenosis (1)
Brain glioblastoma multiforme (1)
Inflammatory bowel disease (1)
Influenza (1)
Interstitial lung disease (1)
Lung carcinoma (1)
Mixed disorder as reaction to stress (1)
Myocardial ischemia (1)
Pancreatic carcinoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (68)
Shotgun proteomics (32)
Mass spectrometry (21)
Affinity purification coupled with mass spectrometry proteomics (13)
Bottom-up proteomics (9)
Top-down proteomics (7)
Mass spectrometry assay (6)
Data-dependent acquisition (6)
NMR spectroscopy (5)
NMR spectroscopy assay (5)
Gel-based experiment (5)
Affinity proteomics (3)
Data-independent acquisition (2)
SWATH MS (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq (1)
Illumina_660K/Illumina_670K (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Elite (17)
Q Exactive (16)
Illumina HiSeq 2500 (7)
Illumina NovaSeq 6000 (4)
Q Exactive HF (4)
Illumina HiSeq 2000 (3)
Orbitrap Fusion (3)
NextSeq 550 (2)
LTQ Orbitrap Velos (2)
Instrument (2)
Orbitrap Exploris 480 (2)
Q Exactive Plus (2)
FACSAria (BD) (1)
GeneChip 3000 7G scanner (Affymetrix) (1)
GentleMACS Dissociator with M tubes (Miltenyi Biotec), QIAzol Lysis Reagent (Qiagen), and RNeasy Microarray Tissue Mini Kit with optional DNase treatment (Qiagen) (1)
Hybridization Cocktails, Mouse Transcriptome 1.0 ST GeneChips, GeneChip Hybridization oven 645 (all Affymetrix) (1)
Bioanalyzer (Agilent), Nanodrop (Thermo Fisher Scientific), and Affymetrix WT Plus Reagent Kit (1)
Axon GenePix 4000B scanning hardware (1)
KingFisher Flex (1)
GentleMACS™ Dissociator (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
NextSeq 500 (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
LCMS-IT-TOF (1)
LTQ Velos ETD (1)
LTQ (1)
LTQ Orbitrap (1)
Orbitrap Astral (1)
Orbitrap Exploris 240 (1)

Publication Date

2015 (128)
2013 (33)
2012 (29)
2021 (28)
2023 (22)
2024 (20)
2022 (20)
2010 (19)
2019 (18)
2014 (18)
2011 (13)
2020 (12)
2016 (12)
2008 (12)
2025 (11)
2026 (10)
2018 (10)
2017 (10)
2006 (6)
2009 (4)
2007 (2)
2005 (1)
2004 (1)

UNIPROT ID/AC

A0A024R8H9 (72)
A0A024RAN2 (72)
A0A024RC46 (72)
A0A087WT59 (72)
A0A087WTX5 (72)
A0A087WVW2 (72)
A0A087WWK8 (72)
A0A087WXI0 (72)
A0A087WYL9 (72)
A0A087X130 (72)
A0A087X1V9 (72)
A0A0A0MR66 (72)
A0A0A0MS07 (72)
A0A0A0MS51 (72)
A0A0A0MSA7 (72)
A0A0C4DG89 (72)
A0A0C4DGT3 (72)
A0AVT1 (72)
A0FGR8 (72)
A0FGR8-2 (72)
A0FGR8-6 (72)
A0JNW5 (72)
P00747 (1)
P00749 (1)
P06238 (1)
P17246 (1)
P20961 (1)
P29598 (1)
Q01177 (1)
Q71SA3 (1)

ENSEMBL ID

ENSG00000147251 (72)
ENSG00000204131 (72)
ENSG00000229353 (72)
ENSG00000170477 (71)
ENSG00000247315 (42)
ENSG00000176092 (33)

CHEBI ID

CHEBI:15428 (39)
CHEBI:15354 (36)
CHEBI:10723 (30)
CHEBI:10983 (30)
CHEBI:1156 (30)
CHEBI:11805 (30)
CHEBI:11851 (30)
CHEBI:1189 (30)
CHEBI:12194 (30)
CHEBI:12947 (30)
CHEBI:1301 (30)
CHEBI:13115 (30)
CHEBI:13705 (30)
CHEBI:1438 (30)
CHEBI:1463 (30)
CHEBI:15343 (30)
CHEBI:15345 (30)
CHEBI:15346 (30)
CHEBI:15347 (30)
CHEBI:15351 (30)
CHEBI:15366 (30)
CHEBI:15367 (30)
CHEBI:15371 (30)
CHEBI:15372 (30)
CHEBI:15374 (30)
CHEBI:15377 (30)
CHEBI:15379 (30)
CHEBI:15380 (30)
CHEBI:15414 (30)
CHEBI:15422 (30)

Metabolite Name

Citric acid (8)
Glucose (7)
Glutamine (7)
Sucrose (7)
Fructose (6)
Leucine (6)
Leucine (5)
Malic acid (5)
Phenylalanine (5)
Alanine (4)
Cholic acid (4)
Choline (4)
Creatine (4)
Glucose (4)
Glycine (4)
Glycine (4)
Histidine (4)
Lactate (4)
Lysine (4)
Phenylalanine (4)
Succinic acid (4)
Taurine (4)
Tryptophan (4)
Tyrosine (4)
Valine (4)
Valine (4)
3-methyl-2-oxobutyrate (3)
4-Aminobutanoate (3)
7-methylguanine (3)
Adenine (3)

First Public Date

2020 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Molecular Cell Biology, Weizmann institute of Science, Israel (5)
Institute of Molecular Health Sciences, Department of Biology, ETH Zürich; Zürich, Switzerland (3)
Clinical Research Division, Fred Hutchinson Cancer Research Center (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf, Germany (2)
PAPPSO, Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE -Le Moulon, 91190, Gif-sur-Yvette, France (2)
University of East Anglia/John Innes Centre, Norwich, UK (2)
1Department of Experimental Hematology, Cancer Research Center Groningen, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9713 GZ Groningen, The Netherlands (1)
Assistant Professor Department of Biochemistry Montreal, Quebec H3G 1Y6 (1)
Center for Regenerative Medicine, Boston University and Boston Medical Center, Boston, MA 02118, USA The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA (1)
Clinical Research Division Fred Hutchinson Cancer Research Center (1)
Clinical Research Division, Fred Hutchinson Cancer Center, USA (1)
Clinical Research Division, Fred Hutchinson Cancer Reseaarch Center (1)
Crick-GSK LinkLabs, UK (1)
Departement for Biomedical Research University of Bern Switzerland (1)
Department of Biology University of Fribourg Chemin du Musée 10 Room 1.302 CH-1700 Fribourg Switzerland (1)
Department of Biology, Duke University, USA (1)
Department of Clinical Biochemistry, Copenhagen University Hospital, Bispebjerg and Frederiksberg Hospital, Denmark (1)
Department of Clinical and Experimental Medicine (1)
Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel (1)
Department of Pharmacology & Chemical Biology W1351 Thomas Starzl Biomedical Science Tower, 200 Lothrop St,Pittsburgh, PA 15261 (1)
Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, CA 94720, USA Plant Gene Expression Center, U.S. Department of Agriculture Agricultural Research Service, Albany, CA 94710, USA (1)
Department of clinical and experimental medicine, Linkoping University, Sweden. (1)
Dept. Molecular Microbiology John Innes Centre Norwich Research Park Norwich, UK (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Dr. Jörn Dengjel Prof. for Biochemistry and Cell Biology Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Dr. rer. nat. Birgit Knebel Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf, Germany (1)
Dr. rer. nat. Birgit Knebel Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf, Germany Tel.: +49-(0)-211-33-82-536 birgit.knebel@ddz.de www.ddz.de (1)
Experimental Hematology, University Medical Center Groningen, The Netherlands (1)
FMHS Building 501 Level 2, Room 210 85 Park Rd Grafton Auckland 1023 New Zealand (1)

IsPrivate

False (32)

Model Flag

Non Kinetic (30)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (38)
ChIP-seq (18)
ChIP-chip by tiling array (6)
Other (5)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
Proteomic profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Plant - High-throughput sequencing (1)
Genotyping by array (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (330)
2021 (308)
2023 (295)
2025 (254)
2024 (233)
2020 (210)
2019 (168)
2018 (162)
2017 (110)
2015 (103)
2016 (89)
2014 (80)
2013 (79)
2012 (66)
2011 (41)
2010 (37)
2026 (35)
2008 (21)
2009 (20)
2006 (12)
2007 (8)
2005 (4)
2004 (4)
2003 (2)
2002 (2)
2000 (2)
1999 (1)

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S. islandicus REY15A pH/Temp stress

diDO-IPTL quantitative analysis (Waldbauer et al. 2017 Anal. Chem.) of pH- and temperature-stress during mid-log and early-stationary phase growth of S. islandicus REY15A

ORGANISM(S): Sulfolobus Islandicus Rey15a (ncbitaxon:930945)

2022-10-21 | MSV000090562 | MassIVE

Human prion disease iTRAQ

Human prion diseases are fatal neurodegenerative disorders characterized by neuronal damage in brain. Protein S-nitrosylation, the covalent adduction of a NO to cysteine, plays a role in human brain biology, and brain dysfunction is a prominent feature of pPrion disease, yet the direct brain targets...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080756 | MassIVE

Synechococcus WH8102/cyanophage S-SM1 15N incorporation

Dataset showing incorporation of extracellular nitrogen (as 15NO3) into phage proteins during infection of a marine cyanobacterium

ORGANISM(S): Synechococcus Cyanophage S-sm1 (ncbitaxon:382277) Synechococcus Sp. Wh 8102 (ncbitaxon:84588)

2019-05-20 | MSV000083830 | MassIVE

Transcription profiling of S. cerevisiae response to the antifungal compound sampangine

Sampangine, a plant-derived alkaloid found in the Annonaceae family, exhibits strong inhibitory activity against the opportunistic fungal pathogens Candida albicans, Cryptococcus neoformans and Aspergillus fumigatus. In the present study, transcriptional profiling experiments coupled with the analy...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-11 | E-GEOD-10073 | biostudies-arrayexpress

The nuclear lamina is a hub for the nuclear function of Jacob.

Not available

S-EPMC7802242 | biostudies-literature

Jacob-induced transcriptional inactivation of CREB promotes Aβ-induced synapse loss in Alzheimer's disease.

Not available

S-EPMC9929644 | biostudies-literature

Sequence analysis of the Hex A gene in Jacob sheep from Bulgaria.

Not available

S-EPMC7896910 | biostudies-literature

A Jacob/Nsmf Gene Knockout Results in Hippocampal Dysplasia and Impaired BDNF Signaling in Dendritogenesis.

Not available

S-EPMC4792503 | biostudies-literature

Spatial and Temporal Evolutionary Patterns in Puumala Orthohantavirus (PUUV) S Segment.

Not available

S-EPMC7400055 | biostudies-literature

Murine Schistosoma-Induced Pulmonary Hypertension: Microarray Data

Rationale: Schistosomiasis is one of the most common causes of pulmonary arterial hypertension worldwide, but the pathogenic mechanism by which the host inflammatory response contributes to vascular remodeling is unknown. We sought to identify signaling pathways that play protective or pathogenic ro...

ORGANISM(S): Mus musculus

2013-07-16 | E-GEOD-48936 | biostudies-arrayexpress

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2984 Results

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