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Repository

biostudies-arrayexpress (160)
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Mass Spectrometry (68)
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Instrument Platform

Q Exactive (8)
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Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
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Liquid Chromatography MS - positive - hilic (1)

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2014 (26)
2022 (25)
2012 (22)
2016 (18)
2015 (18)
2013 (18)
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2006 (2)
2005 (1)

UNIPROT ID/AC

P06213 (1)
P35569 (1)
Q5EG47 (1)

CHEBI ID

CHEBI:16865 (3)
CHEBI:18237 (3)
CHEBI:18257 (3)
CHEBI:22653 (3)
CHEBI:28300 (3)
CHEBI:15741 (2)
CHEBI:16027 (2)
CHEBI:16449 (2)
CHEBI:16610 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)
CHEBI:17368 (2)
CHEBI:15351 (1)
CHEBI:15377 (1)
CHEBI:15379 (1)
CHEBI:15422 (1)
CHEBI:15846 (1)
CHEBI:16136 (1)
CHEBI:16189 (1)
CHEBI:16236 (1)
CHEBI:16288 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:17561 (1)
CHEBI:17709 (1)
CHEBI:17980 (1)
CHEBI:18361 (1)
CHEBI:24636 (1)

Metabolite Name

Asparagine (2)
Aspartate (2)
Citric acid (2)
Succinic acid (2)
1,4-Dioxane-2,5-dione (1)
1-Aminocyclopentanecarboxylic acid, N-ethoxycarbonyl-, heptyl ester (1)
1-Monoacylglycerol (1)
15-oxo prostaglandin F2alpha (1)
2,3,5,8-tetramethyl-decane 2 (1)
2,3-dihydroxybenzoic acid (1)
2,3-dihydroxypropane-1-sulfonate (1)
2,4-Dihydroxybutanoic acid (1)
2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) (1)
2-Butyl-1-octanol (1)
2-Hydroxybutyric acid (1)
2-Hydroxypyridine (1)
2-Keto-3-deoxy-6-phosphogluconate (1)
2-b-D-glucopyranosyloxy-4,7-dimethoxy-1,4-benzoxazin-3-one (HDMBOA glucoside) (1)
2-b-D-glucopyranosyloxy-4-hydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA glucoside) (1)
2-deoxyguanosine (1)
2-oxoglutarate (1)
3'-deoxyguanosine (1)
3,3-dimethyl-2-oxobutanoic acid (1)
3,7-Dimethyl-3-octanol (1)
3-2-Hydroxyethylindole (1)
3-Hydroxybutyric acid (1)
3-hydroxybenzoic acid (1)
3-mercaptopropionic acid (1)
3-methyl-2-oxopentanoic acid (1)
3-oxo-5beta-cholan-24-oic-acid (1)

IsPrivate

False (6)

Modelling Approach

Ordinary differential equation model (6)

Study type

Transcription profiling by array (100)
RNA-seq of coding RNA (31)
Comparative genomic hybridization by array (10)
ChIP-seq (3)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Differential (1)
One-color microarray (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (75)
2024 (72)
2022 (63)
2020 (55)
2021 (52)
2023 (51)
2019 (36)
2016 (36)
2018 (32)
2017 (31)
2014 (31)
2015 (29)
2012 (29)
2013 (25)
2009 (18)
2010 (17)
2026 (15)
2011 (10)
2008 (10)
2005 (3)
2007 (2)
2006 (2)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (17)
Experimental Neurology, University Hospital, Frankfurt am Main, Germany (5)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (3)
Institute of Organic Chemistry and Biochemistry, Czech Academy of Science, Flemingovo n. 2, Prague, 166 10, Czech Republic (2)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (2)
University of Hohenheim, Animal Science, Stuttgart, Germany (2)
University of Hohenheim, Functional Microbiology of Livestock, Stuttgart, Germany (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry ( lab head ) (2)
center for biochemistry, University of cologne (2)
Boston University Chobanian & Avedisian School of Medicine Department of Pathology & Laboratory Medicine (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Chair of protomeics and bioanalytics, Technical University of Munich, Freising, Germany (1)
Cornell University (1)
Czech Centre for Phenogenomics, Institute of Molecular Genetics of the Czech Academy of Sciences (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)
Department of Molecular Medicine, Institute of Virology, Biomedical Research Center, Slovak Academy of Sciences (1)
Department of Molecular Microbiology, Washington University School of Medicine in St. Louis; St. Louis, Missouri, United States of America. (1)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, Missouri, United States of America (1)
Department of Parasitology, Faculty of Science, Charles University, Viničná 7, 12844 Prague 2, Czech Republic (1)
Department of Pediatric Oncology, Hematology, Immunology and Pulmonology University Medical Center for Children and Adolescents Im Neuenheimer Feld 430 D-69120 Heidelberg Germany ( lab head ) (1)
Department of Pharmaceutical Analysis, National Institute of Pharmaceutical Education and Research (NIPER), Hajipur, 844102, Bihar, India (1)
Department of Physiology, Faculty of Science, Charles University, 128 00 Prague, Czechia (1)
Dept. of Pediatrics, Medical University of Wien, Austria (1)
Functional Genomics Laboratory, Translational Health Science and Technology Institute (1)
Institute of Clinical Medicine, University of Tartu, Tartu, Estonia (1)
Institute of Microbiology of the CAS; BIOCEV, Průmyslová 595, Vestec, Czech Republic (1)
Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo n. 2, 16610 Praha 6, Czech Republic (1)
Laboratory of Antibiotic Resistance and Microbial Metabolomics, Kamenik & Balikova Novotna Lab, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)

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3P-seq analysis of S. cerevisiae

PolyA Position Profiling (3P-seq) for S. cerevisiae Analysis of S. cerevisiae

ORGANISM(S): Saccharomyces cerevisiae

2013-12-19 | E-GEOD-53310 | biostudies-arrayexpress

HK_CIA_experiment

In previous studies, we identified the fungal macrocyclic lactone (S)-curvularin (SC) as an anti-inflammatory agent using a screening system detecting inhibitors of the Janus kinase/signal transducer and activator of transcription pathway. The objective of the present study was to investigate whethe...

ORGANISM(S): Mus musculus

2012-09-21 | E-MEXP-3180 | biostudies-arrayexpress

S-nitrosylation of UCHL1 induces its structural instability and promotes α-synuclein aggregation.

Not available

S-EPMC5353675 | biostudies-literature

Short-term alterations in dietary amino acids override host genetic susceptibility and reveal mechanisms of <i>Salmonella</i> Typhimurium small intestine colonization.

Not available

S-EPMC11974825 | biostudies-literature

A systems immunology study comparing innate and adaptive immune responses in adults to COVID-19 mRNA (BNT162b2/mRNA-1273) and adenovirus vectored vaccines (ChAdOx1-S)

We longitudinally profiled plasma proteomes in 54 adults vaccinated with the BNT162b2 (Pfizer-BioNTech) or ChAdOx1-S (Oxford-AstraZeneca) vaccines. Blood was collected pre-vaccination (V0) and 1-7 days after the 1st doses (BNT162b2 or mRNA-1273, V1) to assess innate and early adaptive responses. We ...

ORGANISM(S): Homo sapiens (Human)

2023-03-01 | PXD036608 | Pride

Does the TT Variant of the rs966423 Polymorphism in DIRC3 Affect the Stage and Clinical Course of Papillary Thyroid Cancer?

Not available

S-EPMC7072153 | biostudies-literature

Crosshatch nanofiber networks of tunable interfiber spacing induce plasticity in cell migration and cytoskeletal response.

Not available

S-EPMC6766658 | biostudies-literature

Chemo- and regioselective benzylic C(sp³)-H oxidation bridging the gap between hetero- and homogeneous copper catalysis.

Not available

S-EPMC9118691 | biostudies-literature

ORC precisely positions nucleosomes at origins of replication

The budding yeast genome is marked by 250-350 origins of DNA replication. These origins are bound by the origin recognition complex (ORC) throughout the cell cycle. ORC has known DNA binding sequence preferences which, though necessary for binding, are not sufficient to fully specify a genomic locus...

ORGANISM(S): Saccharomyces cerevisiae

2010-03-19 | E-GEOD-16926 | biostudies-arrayexpress

Skeletal dysplasias: A radiographic approach and review of common non-lethal skeletal dysplasias.

Not available

S-EPMC4209426 | biostudies-literature

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