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ProteomicsIntegrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease
Human gut metaproteome of select healthy and disease cohort.
ORGANISM(S): Human Gut Metaproteome 
2014-11-24 | MSV000078958 | MassIVE
ProteomicsGut Microbial Ecosystem Multiomics in Inflammatory Bowel Disease
Using multiple omics approaches to explore the effect of the gut microbial ecosytem on inflammatory bowel disease
ORGANISM(S): environmental samples 
2019-04-05 | PXD008675 | Pride
Proteomics Microbiome Ibd 
ProteomicsSoil metaproteomics data analysis based on de novo sequencing with the deep learning-based Kaiko model
We generated a protein database directly from soil metaproteomic data by identifying the microbial composition using the Kaiko model's de novo sequencing methods. We first analyzed the mass spectra de novo (without a database), identifying species from the observed peptides. We next gathered full p...
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
2020-10-20 | MSV000086336 | MassIVE
ProteomicsGut Microbial Ecosystem Multiomics in Inflammatory Bowel Disease
Using multiple omics approaches to explore the effect of the gut microbial ecosytem on inflammatory bowel disease
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
2019-07-02 | MSV000084050 | MassIVE
ProteomicsProteomic analysis of Fusarium sp. DS 682 Fungal Mineral Weathering in a Mineral Doped Soil Micromodel
Cell lysates of Fusarium sp. DS 682, a saprotrophic fungus, were prepared from fungal biomass grown on PDA agar without M9 and micronutrients. Fungus was exposed to minerals, 100 uL of 50% (w/v) natural kaolinite solution. Three fungal plate collections for each growth condition, with (+ mineral) an...
ORGANISM(S): Fusarium Sp. (ncbitaxon:29916) 
2021-04-16 | MSV000087221 | MassIVE
MetabolomicsHuman Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
Autism spectrum disorder (ASD) manifests as alterations in complex human behaviors including social communication and stereotypies. In addition to genetic risks, the gut microbiome differs between typically-developing (TD) and ASD individuals, though it remains unclear whether the microbiome contrib...
2019-07-04 | MTBLS726 | MetaboLights
ProteomicsMetaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes despite temporal variations in microbial taxa, genomes, and proteomes
Longitudinal metaproteomics data set looking at the gut microbiome metaproteomes of fivepost-surgery Crohn's Disease patients for five time points over the course of a year.
ORGANISM(S): Human Microbiome 
2018-08-16 | MSV000082823 | MassIVE
ProteomicsMoisture Modulates Soil Reservoirs of Active DNA and RNA viruses
Global proteomics analyses to identify viral proteins in the soil microbiome. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline.
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
MSV000086144 | MassIVE
MetabolomicsGNPS - MetFish: A Metabolomics Platform for Studying Microbial Communities in Chemically Extreme Environments
Here we report a facile method based on in situ chemical derivatization followed by extraction for analysis of metabolites and other chemicals in hypersaline samples, enabling for the first time direct LC-MS-based exo-metabolomics analysis in sample matrices containing up to 2 molar total dissolved ...
ORGANISM(S): Environmental Samples <verrucomicrobiales> (ncbitaxon:48468) 
2020-07-10 | MSV000085713 | GNPS
MetabolomicsInfluence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome
Although the gut microbiome plays important roles in host physiology, health and disease, we lack understanding of the complex interplay between host genetics and early life environment on the microbial and metabolic composition of the gut. We used the genetically diverse Collaborative Cross mouse s...
2016-10-05 | MTBLS345 | MetaboLights
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