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GenomicsDNA sequencing of Heterodera schachtii IRS (Woensdrecht) population
In order to polish a long-read genome assembly, short-read illumina data was obtained from Heterodera schachtii cysts (Woensdrecht population from IRS, the Netherlands). Cysts where obtained from infected plant material. Nematodes were cleaned using a sucrose gradient centrifugation step. Thereafter...
ORGANISM(S): Heterodera schachtii 
2023-11-03 | E-MTAB-13472 | biostudies-arrayexpress
UnknownH3K56 acetylation regulates chromatin maturation following DNA replication.
Not available
S-EPMC11697131 | biostudies-literature
UnknownBiCyCLE NMES-neuromuscular electrical stimulation in the perioperative treatment of sarcopenia and myosteatosis in advanced rectal cancer patients: design and methodology of a phase II randomised controlled trial.
Not available
S-EPMC8442432 | biostudies-literature
TranscriptomicsTime-series RNA-seq on potato root tissue infected by two populations of Globodera pallida
In this experiment we follow the infection of potato by Globodera pallida populations AMPOP02 and Rookmaker. The goal of the experiment was twofold: (i) to follow the expression of effectors in the nematode, (ii) to follow the transcriptional response of the potato plant. In this experiment, we inoc...
ORGANISM(S): Solanum tuberosum 
2025-08-05 | E-MTAB-15312 | biostudies-arrayexpress
ProteomicsAn Intrinsically Disordered Region of Ubp10 Governs its Specificity for Deubiquitinating H2A/H2B Dimers over Nucleosomes
Histone modifications perform a vast array of functions in regulating gene expression, DNA replication, and repair. Monoubiquitination of histone H2B at K123 in yeast (K120 in humans) is an intriguing modification because it is deposited cotranscriptionally, mediates the installation of several othe...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2025-07-16 | PXD051971 | Pride
Deubiqutinase Crosslinking mass spectrometry Ubiquitinated histone Ubp10 Single molecule fret Fact 
UnknownAn acetyl-methyl switch drives a conformational change in p53.
Not available
S-EPMC4317571 | biostudies-literature
UnknownThe common murine retroviral integration site activating Hhex marks a distal regulatory enhancer co-opted in human early T-cell precursor leukemia.
Not available
S-EPMC11889976 | biostudies-literature
TranscriptomicsCorticosteroid treatment of glial cell types
Primary mixed glial cultures were prepared from dissociated cerebral cortices of Sprague-Dawley rats at postnatal day 1 to 3 and glial populations were isolated by sequential rotary shaking procedures using well-established protocols. Cultured cells were exposed to 1 micromol dexamethasone for 24hou...
ORGANISM(S): Rattus norvegicus 
2014-03-08 | E-MTAB-1695 | biostudies-arrayexpress
ProteomicsQuantitative chemical proteomic profiling of phosphoprotein phosphatases
We have developed a chemical proteomic strategy for the systematic interrogation of endogenous phosphoprotein phosphatases (PPP) and their interacting proteins, including regulatory and scaffolding subunits, and substrates (the 'PPPome'). PPPs are captured using an immobilized non-selective PPP inhi...
ORGANISM(S): Neurospora Crassa (ncbitaxon:5141) Candida Albicans (ncbitaxon:5476) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) Schizosaccharomyces Pombe (ncbitaxon:4896) 
2017-07-07 | MSV000081226 | MassIVE
TranscriptomicsComparative genomic hybridization of human samples with deletions of 16p11.2p12.2 or duplication/triplication of 16p11.2p12.2 to identify the breakpoints
Array CGH was performed to identify the breakpoints in 3 cases with deletions of 16p11.2p12.2 and 1 case with a duplication/triplication of 16p11.2p12.2.
ORGANISM(S): Homo sapiens 
2007-09-01 | E-TABM-286 | biostudies-arrayexpress
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