Ji Pan P - OmicsDI

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Unknown (518)
Transcriptomics (27)
Proteomics (27)
Metabolomics (11)
Genomics (2)

Organisms

Homo sapiens (27)
Mus musculus (20)
Methanobrevibacter smithii ATCC 35061 (2)
Macaca fascicularis (2)
Clanis bilineata (1)
Artemisia annua (1)
Rattus norvegicus (1)
Taxillus chinensis (1)

Repository

biostudies-arrayexpress (29)
pride (16)
MetaboLights (11)
iProX (10)
MassIVE (1)

Tissue

Cell culture (6)
Chondrocyte (2)
Heart (2)
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Blood (1)
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Embryonic stem cell (1)
Flower bud (1)
Hepatocyte (1)
Keratinocyte (1)
Leaf (1)
Liver (1)
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Seed (1)
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T cell (1)
T-cell acute lymphoblastic leukemia cell (1)

Disease

Cardiovascular system disease (2)
Acute leukemia (1)
Disease free (1)
Ewing sarcoma of bone (1)
Malaria (1)
Myeloproliferative neoplasm (1)
Non-alcoholic steatohepatitis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (16)
Mass spectrometry (8)
Shotgun proteomics (7)
SWATH MS (5)
Data-independent acquisition (4)
Mass spectrometry assay (3)
Bottom-up proteomics (3)
Data-dependent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (6)
Illumina NovaSeq X (2)
NEBNext rRNA Depletion Kit v2 and NEBNext Ultra II Directional RNA Library Prep Kit Illumina kits (1)
Deeptools, macs3 (1)
NextSeq 1000 (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2025 (14)
2024 (8)
2022 (6)
2026 (5)
2012 (5)
2021 (5)
2011 (4)
2023 (4)
2010 (3)
2018 (2)
2016 (2)
2015 (2)
2007 (2)
2020 (2)
2013 (1)
2008 (1)
2006 (1)

CHEBI ID

CHEBI:15891 (4)
CHEBI:16027 (4)
CHEBI:16235 (4)
CHEBI:16919 (4)
CHEBI:17368 (4)
CHEBI:18344 (4)
CHEBI:24813 (4)
CHEBI:10072 (3)
CHEBI:15318 (3)
CHEBI:15354 (3)
CHEBI:15676 (3)
CHEBI:15698 (3)
CHEBI:15729 (3)
CHEBI:15956 (3)
CHEBI:15971 (3)
CHEBI:16015 (3)
CHEBI:16040 (3)
CHEBI:16238 (3)
CHEBI:16335 (3)
CHEBI:16450 (3)
CHEBI:16525 (3)
CHEBI:16680 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16750 (3)
CHEBI:16828 (3)
CHEBI:16856 (3)
CHEBI:17016 (3)
CHEBI:17172 (3)
CHEBI:17203 (3)

Metabolite Name

Taurine (3)
(17alpha,23S)-Epoxy-28,29-dihydroxy-27-norlanost-8-ene-3,24-dione (2)
(1S)-1-hydroxy-23-oxo-24,25,26,27-tetranorcalciol (2)
(1beta,2alpha,3alpha)-1,2,3,24-Tetrahydroxy-12-oleanen-28-oic acid (2)
(1xi,3xi)-1,2,3,4-Tetrahydro-1-methyl-beta-carboline-3-carboxylic acid (2)
(23S,24S)-17,23-Epoxy-24,29-dihydroxy-27-norlanost-8-ene-3,15-dione (2)
(25S)-5alpha-cholestan-3beta,4beta,6alpha,7alpha,8beta,15beta,16beta,26-octol (2)
(25S)-5alpha-cholestan-3beta,6alpha,8,15beta,16beta,26-hexol (2)
(25S)-5alpha-cholestan-3beta,6alpha,8beta,15alpha,16beat,26-hexol (2)
(2S)-2-hydrazinyl-3-(4-hydroxy-3-methoxyphenyl)-2-methylpropanoic acid (2)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (2)
(6E,8R,10Z)-8-hydroxy-3-oxohexadecadienoic acid (2)
(9S,13S)-1a,1b-dihomo-jasmonic acid (2)
(E)-5-(3,4,5,6-Tetrahydro-3-pyridylidenemethyl)-2-furanmethanol (2)
1-(3-Methyl-2-butenoyl)-6-apiosylglucose (2)
11'-Carboxy-alpha-chromanol (2)
11-Hydroxyandrosterone (2)
14-hydroxy-12-tetradecenoic acid (2)
17-Hydroxyprogesterone (2)
18-Oxocortisol (2)
1b,3a,7b-Trihydroxy-5b-cholanoic acid (2)
1beta,3beta,5alpha,6beta-tetrahydroxyandrostan-17-one (2)
2-Aminobenzoic acid (2)
2-Carboxy-5,7-dimethyl-4-octanolide (2)
2-Hydroxy-7,8-dehydrograndiflorone (2)
2-amino-8-oxo-9,10-epoxy-decanoic acid (2)
2-aminoadipic acid (2)
2-hydroxy-7-methyl-Octanedioic acid (2)
2-{3-[(3,3-dimethyloxiran-2-yl)methyl]-4,6-dihydroxy-2-methoxyphenyl}acetic acid (2)
21-Hydroxypregnenolone (2)

Study type

Transcription profiling by array (13)
RNA-seq of coding RNA (3)
Other (2)
ChIP-seq (2)
Transcription profiling by high throughput sequencing (1)
MeDIP-seq (1)
ChIP-chip by tiling array (1)
MBD-seq (1)
ATAC-seq (1)
Hi-C (1)
Methylation profiling by array (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (102)
2023 (62)
2022 (60)
2024 (59)
2021 (50)
2020 (43)
2019 (28)
2018 (27)
2016 (20)
2017 (17)
2014 (15)
2015 (14)
2026 (13)
2013 (8)
2012 (8)
2011 (7)
2010 (7)
2008 (2)
2007 (2)
2009 (2)
2006 (1)

Lab affiliation

Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (1)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (1)
Guangxi Botanical Garden of Medicinal Plant, Nanning, China (1)
Institute of Clinical Chemistry, University Medical Center Göttingen (1)
Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China. (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
School of Life Science, Peking University (1)
max planck institute (1)

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Methanobrevibacter smithii expression profiling

This SuperSeries is composed of the following subset Series: GSE25408: The pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii GSE25535: Expression data from an in vitro growth of Methanobrevibacter smithii PS Refer to individual Series

ORGANISM(S): Methanobrevibacter smithii ATCC 35061

2011-11-07 | E-GEOD-25537 | biostudies-arrayexpress

Pan-S-locus analysis reveals insights into the origin and evolution of self-incompatibility in the orange subfamily.

Not available

S-EPMC12506349 | biostudies-literature

Pan-cancer analysis: predictive role of TAP1 in cancer prognosis and response to immunotherapy.

Not available

S-EPMC9912572 | biostudies-literature

A research and new understanding for autoimmune sterility from seminal plasma proteomics

The global infertility rate has been increasing annually, and male infertility becoming severe. The proportion of idiopathic infertility is high, with most patients with ambiguous clinical symptoms. These symptoms manifested as declining semen quality, and the effects of autoimmune factors on this m...

ORGANISM(S): Rattus norvegicus (Rat)

2025-05-06 | PXD019976 | Pride

Expression data from an in vitro growth of Methanobrevibacter smithii PS

RNA-sequencing is a powerful tool for exploring expression profiles of microbial species that does not require the production of a custom genechip. We used microarrays to compare our quantitative RNA-sequencing method to the standard expression quantification methods Methanobrevibacter smithii PS cu...

ORGANISM(S): Methanobrevibacter smithii ATCC 35061

2011-03-30 | E-GEOD-25535 | biostudies-arrayexpress

Pan-WD40ome analysis of 26 diverse inbred lines reveals the structural and functional diversity of WD40 proteins in maize.

Not available

S-EPMC11847395 | biostudies-literature

Factors Affecting the Treatment Heterogeneity of PPARγ and Pan-PPAR Agonists in Type 2 Diabetes Mellitus: A Systematic Review and Machine Learning-Based Meta-Regression Analysis.

Not available

S-EPMC12845350 | biostudies-literature

Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics.

Not available

S-EPMC9534762 | biostudies-literature

Construction of a Prognostic Model for Hypoxia-Related LncRNAs and Prediction of the Immune Landscape in the Digestive System Pan-Cancer.