Johnston J J - OmicsDI

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Unknown (2558)
Proteomics (47)
Transcriptomics (37)
Genomics (9)
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Organisms

Homo sapiens (45)
Mus musculus (19)
Drosophila melanogaster (4)
Glycine max (4)
Saccharomyces cerevisiae (2)
Rattus norvegicus (2)
Arabidopsis thaliana (2)
Trypanosoma brucei (2)
Canis lupus (1)
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Oryza sativa Japonica Group (1)
Bacteria (1)
Canis lupus familiaris (1)
Human alphaherpesvirus 1 (1)
Physcomitrium patens (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120200 (1)

Organisms

Mus musculus (1)

Repository

pride (39)
biostudies-arrayexpress (38)
EGA (6)
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Tissue

Cell culture (11)
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Disease

Breast cancer (3)
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Technology Type

Mass Spectrometry (39)
Shotgun proteomics (25)
Bottom-up proteomics (11)
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Instrument Platform

Illumina NovaSeq X (2)
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Liquid Chromatography MS - positive - reverse phase (1)

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2012 (9)
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2016 (8)
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2020 (4)
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2014 (3)
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2007 (2)
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2013 (2)
2015 (1)
2008 (1)
2017 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:14336 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15724 (2)
CHEBI:15728 (2)
CHEBI:15741 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:15999 (2)
CHEBI:16010 (2)
CHEBI:16108 (2)
CHEBI:16199 (2)
CHEBI:16244 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16359 (2)
CHEBI:16449 (2)
CHEBI:16530 (2)
CHEBI:16552 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16750 (2)
CHEBI:16755 (2)
CHEBI:16811 (2)
CHEBI:16870 (2)
CHEBI:16914 (2)

Metabolite Name

Cytidine (2)
Guanine (2)
N-acetylserine (2)
Uridine (2)
Vanillin (2)
(-)-epigallocatechin (1)
(4-chloro-2-methylphenoxy)acetic acid (1)
(R)-2-hydroxystearic acid (1)
1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (10)
RNA-seq of coding RNA from single cells (3)
ChIP-seq (2)
RNA-seq of non coding RNA (2)

Release Date

2021 (279)
2023 (279)
2022 (271)
2024 (263)
2025 (252)
2020 (208)
2019 (182)
2018 (148)
2017 (109)
2016 (106)
2015 (96)
2014 (87)
2013 (59)
2011 (44)
2012 (40)
2010 (38)
2026 (36)
2008 (26)
2009 (24)
2007 (12)
2006 (8)
2005 (7)
2004 (6)
2002 (4)
2000 (4)
1998 (3)
2001 (2)
2003 (1)
1999 (1)
1997 (1)

Lab affiliation

Atomic Virology Lab, Division of Virology, Department of Pathology, University of Cambridge (2)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (2)
USDA, ARS (2)
University of Southampton (2)
Biochemistry (1)
Breast Cancer Now The Institute of Cancer Research (1)
Breast Cancer Now Toby Robins Research Centre The Institute of Cancer Research London (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology School of Medicine Stanford University (1)
Cancer Research UK, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE (1)
Cancer Sciences Faculty of Medicine University of Southampton (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton, UK (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, UK (1)
Centre for Infection and Immunity, Queen’s University Belfast, Belfast, Northern Ireland, BT9 7BL, UK. (1)
Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, Edinburgh, UK (1)
Charles Perkins Centre, School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia. (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Department of Chemistry and Biochemistry, Brigham Young University (1)
Department of Chemistry and Biochemistry, Brigham Young University (lab head) (1)
Department of Chemistry and Biochemistry, Brigham Young University. (1)
Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan Department of Bioengineering, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan (1)
Department of Chemistry, Imperial College London, Exhibition Road, London SW7 2AZ, UK (1)
Department of Pathology, University of Cambridge (1)
Division of Molecular and Cellular Function School of Biological Sciences The University of Manchester M139PT Manchester UK (1)
Dr. Jayaseelan Murugaiyan, Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Free University of Berlin, Robert-von-Ostertag-Str. 7-13, Berlin 14163, Germany. Jayaseelan.murugaiyan@fu-berlin.de Department of Biotechnology, SRM University AP, Andhra Pradesh, Neerukonda, Mangalagiri, Andhra Pradesh 522 502, India. jayaseelan.m@srmap.edu.in (1)
GlaxoSmithKline (GSK) (1)
Hayley Sharpe, Signalling, Babraham Institute, Cambridge, UK (1)
Institute for Molecular Biosciences University of Queensland Brisbane Qld 4072 Australia (1)
Institute of Parasitology, Biology Center, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, CZECH REPUBLIC (1)
Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis) 370 05, Czech Republic (1)

Tags

xref:PubMed:19608860 (1)

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scRNA-seq from Trex1 KO in tumor

Single-cell RNA-seq data for Trex1 WT and KO mice from the tumor. Used for manuscript in submission at Science Advances.

ORGANISM(S): Mus musculus

2026-03-25 | E-MTAB-16526 | biostudies-arrayexpress

Bulk RNA-seq from Trex1 KO in heart

Bulk RNA-seq data for Trex1 WT and KO mice from the heart. Used for manuscript in submission at Science Advances.

ORGANISM(S): Mus musculus

2026-03-25 | E-MTAB-16524 | biostudies-arrayexpress

Drosophila Johnston organ genes

Hemizygous ato[1]/Df(3R)p[13] null mutants lack Johnston organ (JO) in their 2nd antennal segment. We screened for genes that are expressed in JO by comparing the 2nd antennal segment transcriptomes between ato[1]/Df(3R)p[13] mutants and balanced Df(3R)p[13]/TM3 and ato[1]/TM3 controls. To assess t...

ORGANISM(S): Drosophila melanogaster

2012-08-31 | E-MEXP-3609 | biostudies-arrayexpress

scRNA-seq from Trex1 KO in heart

Single-cell RNA-seq data for Trex1 WT and KO mice from the heart. Used for manuscript in submission at Science Advances.

ORGANISM(S): Mus musculus

2026-03-25 | E-MTAB-16525 | biostudies-arrayexpress

Transcription profiling of mouse vivo follicular helper CD4 T cells (TFH) versus non follicular helper CD4 T cells (non-TFH)

Analysis of in vivo antigen-specific (LCMV-specific, SMARTA TCR transgenic) follicular helper CD4 T cells (CXCR5high),versus non-follicular helper CD4 T cells (CXCR5low), eight days after viral infection. A paper including data analysis of these experiments has been accepted for publication (Robert ...

ORGANISM(S): Mus musculus

2009-08-07 | E-GEOD-16697 | biostudies-arrayexpress

Expression Data from in vivo follicular helper CD4 T cells (TFH) versus non follicular helper CD4 T cells (non-TFH)

ORGANISM(S): Mus musculus

2009-07-28 | GSE16697 | GEO

Antibody-Conjugated Polymersomes with Encapsulated Indocyanine Green J-Aggregates and High Near-Infrared Absorption for Molecular Photoacoustic Cancer Imaging.

Not available

S-EPMC11246536 | biostudies-literature

Readability of advance directive documentation in Canada: a cross-sectional study.

Not available

S-EPMC6182111 | biostudies-literature

Lifetime Risk of Symptomatic Hand Osteoarthritis: The Johnston County Osteoarthritis Project.