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TranscriptomicsTranscription profiling of yeast mutant strains vs WT: YIA29 (mdl1::HIS3); YIA30 (yme1::KAN); YIA31 (mdl1::HIS3 yme1::KAN);
All yeast strains were in the genetic background W303-1A (MATa leu2-3,112 trp1-1 ura3-1 can1-100 ade2-1 his3-11,15). Gene expression profiles of the following mutant strains were compared with WT: YIA29 (mdl1::HIS3); YIA30 (yme1::KAN); YIA31 (mdl1::HIS3 yme1::KAN); 2 independent RNA preparations per...
ORGANISM(S): Saccharomyces cerevisiae 
2005-12-31 | E-EMBL-5 | biostudies-arrayexpress
TranscriptomicsDetermination of Sigma 54 reglons in Bacillus thuringiensis HD73 strain
To determine Sigma 54 (SigL) reglons in Bacillus thuringiensis HD73 strain, A sigLmutant, HD(M-NM-^TsigL::kan), was constructed with insertion of kanamycin resistance gene cassete. We have employed whole genome microarray expression profiling as a discovery platform to identify the difference of gen...
ORGANISM(S): Bacillus thuringiensis 
2013-06-29 | E-GEOD-48410 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli strains MG Kan N15(+), MG Kan-Tos N15(-) and MG Kan-Tos N15(+) which has a linear genome made by MG Kan N15(+) and MG Kan-Tos N15(-)
A comparison of transcriptional profiles between MG Kan N15 (+) or MG Kan-Tos N15 (-), which are reference strains and MG Kan-Tos N15 (+) strain. The strain, MG Kan-Tos N15 (+), has linear genome which are made by MG Kan N15 (+) and MG Kan-Tos N15 (-).
ORGANISM(S): Escherichia coli 
2006-11-30 | E-MEXP-910 | biostudies-arrayexpress
UnknownA KAN-based hybrid deep neural networks for accurate identification of transcription factor binding sites.
Not available
S-EPMC12058130 | biostudies-literature
UnknownKAN-GLNet: An enhanced PointNet++ model for canola silique segmentation and counting.
Not available
S-EPMC12622843 | biostudies-literature
UnknownPotent 1,2,4-Triazino[5,6 b]indole-3-thioether Inhibitors of the Kanamycin Resistance Enzyme Eis from Mycobacterium tuberculosis.
Not available
S-EPMC6528465 | biostudies-literature
TranscriptomicsTranscription profiling of E. coli wild type and ycgF::kan cells treated with blue-light irradiation for 3 hours at 16oC
Wildtype and ycgF::kan cells were grown in LB medium at 37°C to an OD(578 nm) of 0,7. Then the cultures were shifted to 16°C and blue-light irradiated for 3 hours.
ORGANISM(S): Escherichia coli 
2009-06-03 | E-MEXP-1877 | biostudies-arrayexpress
TranscriptomicsExpression analysis of N. europaea (ATCC 19718) wildtype and pFur::Kan mutant grown in Fe-replete and Fe-limited media
Investigation of whole genome gene expression level changes in a Nitrosomonas europaea (ATCC 19718) wildtype and pFur::Kan mutant [kanamycin resistance cassette insertion in the promoter region of the fur gene (NE0616)] strains grown in Fe-replete and Fe-limited media. The Nitrosomonas europaea (ATC...
ORGANISM(S): Nitrosomonas europaea ATCC 19718 
2010-06-20 | E-GEOD-18709 | biostudies-arrayexpress
UnknownBehavioral deficits and cholinergic pathway abnormalities in male Sanfilippo B mice.
Not available
S-EPMC4970944 | biostudies-literature
ProteomicsAnnotation of the genes responsible for helix 69 rRNA modifications in 23S of Bacillus subtilis.
A total of 25 modifications were mapped to 16S and 23S RNA in B. subtilis ribosome, however most of the genes responsible for these modification sites remain unknown. In this work, bottom-up oligonucleotide LC-MS/MS was used to detect rRNA modifications in five single gene knock-out strains: yydA, ...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2024-08-06 | PXD051518 | Pride
Pseudouridine Base and ribose methylations 23s Rna modifications Bacillus subtilis. Ribosomal rna 
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