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ProteomicsVibrio Cholerae ET and rssP::kan; dataset protein profiling
Identify the protein content of culture supernatants from WT and rssp::kan mutant of Vibrio Cholerae.
ORGANISM(S): Vibrio cholerae 
2019-01-25 | PXD000896 | Pride
Protein profiling Vibrio cholerae Lc-ms/ms 
TranscriptomicsTranscription profiling of E. coli wild type and ycgF::kan cells treated with blue-light irradiation for 3 hours at 16oC
Wildtype and ycgF::kan cells were grown in LB medium at 37°C to an OD(578 nm) of 0,7. Then the cultures were shifted to 16°C and blue-light irradiated for 3 hours.
ORGANISM(S): Escherichia coli 
2009-06-03 | E-MEXP-1877 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast mutant strains vs WT: YIA29 (mdl1::HIS3); YIA30 (yme1::KAN); YIA31 (mdl1::HIS3 yme1::KAN);
All yeast strains were in the genetic background W303-1A (MATa leu2-3,112 trp1-1 ura3-1 can1-100 ade2-1 his3-11,15). Gene expression profiles of the following mutant strains were compared with WT: YIA29 (mdl1::HIS3); YIA30 (yme1::KAN); YIA31 (mdl1::HIS3 yme1::KAN); 2 independent RNA preparations per...
ORGANISM(S): Saccharomyces cerevisiae 
2005-12-31 | E-EMBL-5 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli CSH50 wild type and hupA::cm hupB::kan double mutant cells
Comparison of transcript profiles of E. coli CSH50 wild-type and CSH50 hupA::cm hupB::kan double mutant cells to distinguish between the genes expressed either in the presence or absence of HU during log phase.
ORGANISM(S): Escherichia coli 
2008-12-01 | E-MEXP-1742 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type G. sulfurreducens DL1 strain and mutant delta-sfrAB::kan, acetate-adapted strain using fumarate as an electron acceptor
1. Summary: SfrAB, the soluble ferric reductase of Geobacter sulfurreducens, is a two subunit complex that can catalyze the NADPH-dependent reduction of chelated Fe(III) and is encoded in a two gene cluster in which the sfrB gene (GSU_0510) is 126 bp upstream of the sfrA gene (GSU_0509)[Kaufmann an...
ORGANISM(S): Geobacter sulfurreducens 
2008-01-03 | E-TIGR-130 | biostudies-arrayexpress
UnknownToluene 3-monooxygenase of Ralstonia pickettii PKO1 is a para-hydroxylating enzyme.
Not available
S-EPMC400597 | biostudies-literature
TranscriptomicsComparison of gene expression in M. tuberculosis TrxB2-DUC mutant treated or not with atc
M. tuberculosis thioredoxin reductase (TrxB2) is essential for bacterial survival in vitro and in vivo. To gain insight into the mechanisms underlying lethality caused by TrxB2 depletion, we compared the mRNA profiles of TrxB2-DUC mutant in the presence and absence of atc. We grew bacteria in 7H9 me...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2016-05-12 | E-GEOD-72329 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression in M. tuberculosis TrxB2-DUC mutant treated or not with atc and DTT
M. tuberculosis thioredoxin reductase (TrxB2) is essential for bacterial survival in vitro and in vivo. To gain insight into the pathways dependent on TrxB2, we compared the mRNA profiles of TrxB2-DUC mutant in the presence and absence of atc and DTT. We grew bacteria in 7H9 medium to an OD of 0.5~0...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2016-05-12 | E-GEOD-78894 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression in M. tuberculosis TrxB2-TetON-tetO-WT mutant treated or not with atc
M. tuberculosis thioredoxin reductase (TrxB2) is essential for Mtb physiology and pathogenesis. To gain insight into its biological functions, we generated the TrxB2-TetON-tetO mutants, in which TrxB2 is partially depleted in the absence of atc without impairing bacterial viability. We grew TrxB2-Te...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2016-05-12 | E-GEOD-72328 | biostudies-arrayexpress
TranscriptomicsTranscriptional analysis of luxS-null strain in Yersinia pestis CO92 at 37M-BM-0C
Yersinia pestis, the etiological agent of plague, is able to sense cell density by quorum sensing. The function of quorum sensing in Y. pestis is not clear. Here, the process of autoinducer 2 (AI-2) quorum sensing was investigated by comparing transcript profiles when luxS gene was knocked out. The ...
ORGANISM(S): Yersinia pestis 
2013-09-05 | E-GEOD-22849 | biostudies-arrayexpress
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