Kaplan A A - OmicsDI

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Unknown (26923)
Transcriptomics (250)
Genomics (224)
Proteomics (103)
Methylation profiling (10)
Clinical (6)
Genomic (4)
Other (4)
Metabolomics (4)
Models (1)

Organisms

Homo sapiens (298)
Mus musculus (57)
Saccharomyces cerevisiae (18)
Rattus norvegicus (7)
Oryctolagus cuniculus (5)
Drosophila melanogaster (4)
Salmo salar (2)
Babesia microti (1)
Zaire ebolavirus (1)
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Escherichia coli CFT073 (1)
Ambystoma mexicanum (1)
Drosophila pseudoobscura (1)
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Organisms

Homo sapiens (131)
Mus musculus (18)
Gryllus bimaculatus (1)
Salmo salar (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (194)
ENA (176)
geo (111)
pride (76)
EGA (23)
MassIVE (5)
dbGaP (4)
MetaboLights (4)
jPOST (3)
iProX (2)
PanoramaPublic (2)
BioModels (1)

Tissue

Cell culture (19)
Epithelial cell (17)
Fibroblast (9)
Blood serum (5)
Brain (4)
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Blood (3)
Blood plasma (3)
Liver (3)
Macrophage (3)
Retina (3)
Neutrophil (2)
T cell (2)
Acute lymphoblastic leukemia cell line (1)
Adipose tissue (1)
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Blood cell (1)
Bone marrow (1)
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Colon (1)
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Fat cell (1)
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Heart (1)
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Disease

Breast cancer (6)
Colorectal cancer (2)
Glioblastoma (2)
Leber congenital amaurosis (2)
Lung cancer (2)
Malignant neoplasm of ovary (2)
Systemic lupus erythematosus (2)
Healthy (1)
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Normal (1)
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Anal canal squamous cell carcinoma (1)
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Emphysema (1)
Head and neck cancer (1)
Head and neck squamous cell carcinoma (1)
Hepatocellular carcinoma (1)
Human cytomegalovirus infection (1)
Insulin insensitivity (1)
Kidney cancer (1)
Non-small cell lung carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Pulmonary hypertension (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (76)
Shotgun proteomics (42)
Bottom-up proteomics (9)
Gel-based experiment (9)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (5)
All-ion fragmentation (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Top-down proteomics (3)
Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
SWATH MS (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Mass spectrometry (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Bio-Rad T100 Thermocycler (2)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Q Exactive (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
HIVE computer cluster (1)
IScan Illumina (1)
MinION (1)
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Q Exactive Plus (1)
Xevo G2-S QTof (1)
Gas Chromatography MS - positive - low polarity - GC-MS (1)
Liquid Chromatography MS - positive - direct infusion (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)
LTQ Orbitrap Velos (1)

Publication Date

2013 (40)
2024 (31)
2012 (30)
2018 (26)
2015 (25)
2014 (25)
2011 (25)
2021 (24)
2022 (22)
2023 (21)
2010 (21)
2026 (19)
2025 (15)
2019 (15)
2020 (12)
2016 (11)
2008 (11)
2009 (8)
2017 (7)
2007 (5)
2005 (3)
2006 (2)

CHEBI ID

CHEBI:15428 (2)
CHEBI:16000 (2)
CHEBI:16010 (2)
CHEBI:16027 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:18012 (2)
CHEBI:25017 (2)
CHEBI:78320 (2)
CHEBI:10642 (1)
CHEBI:1148 (1)
CHEBI:136236 (1)
CHEBI:136239 (1)
CHEBI:136245 (1)
CHEBI:140361 (1)
CHEBI:140362 (1)
CHEBI:14314 (1)
CHEBI:14336 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15356 (1)
CHEBI:15366 (1)
CHEBI:15422 (1)
CHEBI:15611 (1)
CHEBI:15741 (1)
CHEBI:15756 (1)
CHEBI:15846 (1)
CHEBI:15891 (1)
CHEBI:15963 (1)
CHEBI:15996 (1)

Metabolite Name

2-Hydroxybutyrate (1)
2-Hydroxyglutarate (1)
2-hydroxypyridine (1)
2-oxoglutaric acid (1)
2-phospho-D-glyceric acid (1)
3-Hydroxybutyrate (1)
3-hydroxypyridine (1)
4-Aminobutyrate (1)
6-D-phosphogluconic acid (1)
ADP (1)
AMP (1)
ATP (1)
Acetate (1)
Adenosine (1)
Alanine (1)
Ascorbate (1)
Asparagine (1)
Aspartate (1)
Betaine (1)
Butyrate (1)
Carnitine (1)
Choline (1)
Citrate (1)
Creatine (1)
Creatine phosphate (1)
Creatinine (1)
Cystathionine (1)
Cysteine (1)
D-(+)-mannose (1)
D-fructose 6-phosphate (1)

First Public Date

2014 (41)
2024 (26)
2026 (14)
2022 (14)
2025 (13)
2023 (12)
2021 (11)
2019 (11)
2015 (10)
2017 (9)
2020 (8)
2018 (6)
2013 (1)

Modelling Approach

Constraint-based model (1)

Study status

Active, not recruiting (2)
Completed (1)
Ongoing (1)
Recruiting (1)
Terminated (1)

Lab affiliation

Weizmann Institute of Science (6)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (2)
Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center (2)
Institute of Lung Biology and Disease and Comprehensive Pneumology Center, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, German (2)
Proteomic Plateform Necker - SFR Necker - US24 (2)
University of Pennsylvania (2)
1 Garvan Institute of Medical Research and The Kinghorn Cancer Centre, 384 Victoria Street Darlinghurst Sydney, NSW, 2010, Australia. 2 St Vincent’s Clinical School, Faculty of Medicine, UNSW Sydney, Australia. (1)
Associate Professor Faculty of Biology Technion-Israel Institute of Technology, Technion City, Haifa 3200003, Israel (1)
Associate Professor, Department of biotechnology and research, Sir Ganga ram hospital, New Delhi -110060, Delhi, India (1)
Biomedical Engineering, Tufts University, Medford, MA (1)
CHU Angers, Angers, France Inserm UMR 1307, CNRS UMR 6075, Université de Nantes, CRCI2NA, Université d'Angers, Angers, France (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Center Leader Proteomics Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (1)
Chief, Molecular Parasitology and Entomology Unit Laboratory of Malaria and Vector Research National Institutes of Health (1)
Department for Proteomics, Center for Translational and Clinical Research, School of Medicine, University of Zagreb Department of Anatomy “Drago Perović”, School of Medicine, University of Zagreb (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biochemistry, Albert Einstein College of Medicine, The Bronx, NY 10461, United States (1)
Department of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, ON, N6A 5C1, Canada (1)
Department of Biochemistry, University of Colorado, Boulder, CO 80303, USA (1)
Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Yeditepe University (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Molecular Microbiology, Washington University School of Medicine in St. Louis; St. Louis, Missouri, United States of America. (1)
Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada (1)
Department of Surgery Hollings Cancer Center (HO 512H) Medical University of South Carolina (1)
Department of Traumatology and Acute Critical Medicine Osaka University Graduate School of Medicine (1)
Département de Neurochirurgie, CHU Angers, Angers, France Inserm UMR 1307, CNRS UMR 6075, Université de Nantes, CRCI2NA, Université d'Angers, Angers, France (1)
Environmental Toxicology Graduate Program and Department of Chemistry, University of California, Riverside, California 92521, United States (1)

Keyword

6-diazo-5-oxo-l-Norleucine (DON) (1)
IRINOTECAN (1)
Laparoscopic surgery, colorectal cancer (1)
PEGylated Pseudomonas 7A glutaminase-asparaginase (1)
REGORAFENIB (1)

IsPrivate

False (1)

Submitter Keywords

Not Peer Reviewed (1)

Study type

Transcription profiling by array (122)
Proteomic profiling by array (16)
RNA-seq of coding RNA (11)
ChIP-chip by tiling array (9)
ChIP-seq (9)
Comparative genomic hybridization by array (6)
Genotyping by array (5)
Methylation profiling by array (5)
Unknown experiment type (4)
Interventional (4)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Observational (1)
Observational patient registry (1)

Release Date

2022 (4210)
2025 (3832)
2023 (3291)
2021 (3265)
2024 (2914)
2020 (2260)
2019 (1489)
2018 (1149)
2017 (940)
2016 (730)
2015 (645)
2026 (539)
2014 (459)
2013 (344)
2012 (274)
2011 (220)
2010 (174)
2009 (109)
2008 (77)
2007 (48)
2006 (32)
2005 (21)
2003 (18)
2004 (17)
2002 (13)
2000 (13)
2001 (11)
1999 (9)
1998 (6)
1997 (1)

Location

France (1)
New Zealand (1)
Poland (1)
Spain (1)

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Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae.

Not available

S-EPMC4026157 | biostudies-literature

HIS-based Kaplan-Meier plots--a single source approach for documenting and reusing routine survival information.

Not available

S-EPMC3053219 | biostudies-literature

Structure and Function of a Transcriptional Network Activated by Hog1

Cells regulate gene expression using a complex network of signaling pathways, transcription factors and promoters. To gain insight into the structure and function of these networks we analyzed gene expression in single and multiple mutant strains to build a quantitative model of the Hog1 MAPK-depen...

ORGANISM(S): Saccharomyces cerevisiae

2008-07-29 | E-GEOD-12270 | biostudies-arrayexpress

Troponin at presentation: A key predictor of chronic myocardial impairment post-myocarditis-A prospective cohort study.

Not available

S-EPMC12618808 | biostudies-literature

Defining a Th9 transcriptome

Microarray analyses were performed to compare gene expression in cultured mouse Th9, Th2 and Treg cells and resting versus activated Th9 cells. Three replicates were analyzed for each culture condition; Th9 unstim, Th2 unstim, Treg unstim, Th9 stim

ORGANISM(S): Mus musculus

2014-03-26 | E-GEOD-44937 | biostudies-arrayexpress

Insulin degludec: Lower day-to-day and within-day variability in pharmacodynamic response compared with insulin glargine 300 U/mL in type 1 diabetes.

Not available

S-EPMC5485013 | biostudies-literature

A Prognostic Gene Expression Index in Ovarian Cancer

Ovarian carcinoma has the highest mortality rate among gynecological malignancies. In this project, we investigated the hypothesis that molecular markers are able to predict outcome of ovarian cancer independently of classical clinical predictors, and that these molecular markers can be validated us...

ORGANISM(S): Homo sapiens

2009-02-09 | E-GEOD-14764 | biostudies-arrayexpress

Bias-adjusted Kaplan-Meier survival curves for marginal treatment effect in observational studies.

Not available

S-EPMC6684083 | biostudies-literature

Macrophage Checkpoint Nanoimmunotherapy Has the Potential to Reduce Malignant Progression in Bioengineered <i>In Vitro</i> Models of Ovarian Cancer.

Not available

S-EPMC11653402 | biostudies-literature

Risk of chronic periodontitis in patients with obstructive sleep apnea in Korea: a nationwide retrospective cohort study.

Not available

S-EPMC10586923 | biostudies-literature