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TranscriptomicsTranscription profiling of B7.5 lineage cells in the tunicate Ciona intestinalis to study cardiac cell migration
Eight different types of sample (three samples each) were used in this study of cardiac cell migration in the tunicate Ciona intestinalis. The B7.5 lineage cells were isolated by Fluorescent Activated Cell Sorting (FACS) at the tailbud stage, when the cardiac precursors (anterior B7.5 lineage cells)...
ORGANISM(S): Ciona intestinalis 
2008-06-01 | E-MEXP-1478 | biostudies-arrayexpress
ProteomicsRapid and Label-Free Structural Proteomics by One-Step Swift Trypsin LiP-MS
We developed a rapid, surface-targeted limited proteolysis workflow, Swift Trypsin LiP-MS (STLiP-MS), to profile proteome-wide structural changes under near-native conditions. STLiP-MS uses a trypsin-immobilized spin column and centrifugation-controlled contact to achieve instantaneous, highly repro...
ORGANISM(S): Homo Sapiens (human) Cellular Organisms 
2026-01-05 | PXD069771 | JPOST Repository
TranscriptomicsTranscriptome analysis of annotated coding genes and sORF in 16 organs and 17 environmental conditions at A. thaliana
There are 16 organ samples (dry seeds, 24H imbibed seeds, 48H imbibed seeds, juvenile rosette, adult rosette, senescence leaves, cauline leaves, stems, young buds, mature flower buds, flowers, young siliques, mature siliques and old siliques) with triplicates. There are 17 samples of different envir...
ORGANISM(S): Arabidopsis thaliana 
2012-09-30 | E-GEOD-34188 | biostudies-arrayexpress
ProteomicsDIA-MS based plasma peptidomics workflow for profiling organ-derived peptides
In this study, we acquired DDA-MS data and DIA-MS data from peptide extracts of plasma and eleven organs (lung, spleen, adrenal gland, kidney, heart, liver, muscle, pancreas, cerebellum, hippocampus, and cerebral cortex). These data were analyzed using FragPipe v23 to obtain peptide identification r...
ORGANISM(S): Mus Musculus (mouse) 
2026-07-13 | PXD073758 | JPOST Repository
ProteomicsAssessing Native-Liver Post-Kasai Portoenterostomy for biliary atresia through Stool Proteome Analysis
In this prospective study, we analyzed stool proteomes from four patients with well-controlled conditions, four patients with recurrent cholangitis, and three patients with prolonged jaundice but no cholangitis, all of whom had undergone Kasai portoenterostomy for biliary atresia (BA). The study als...
ORGANISM(S): Homo Sapiens (human) 
2025-09-04 | PXD055756 | JPOST Repository
ProteomicssJIA serum proteome profiling with DIA-MS
We performed a DIA-MS proteomic analysis of sera from systemic juvenile idiopathic arthritis with different activity phases using a high protein depletion process. We profiled the proteins in the sera that differed significantly in their activity phase.
ORGANISM(S): Homo Sapiens (human) 
2022-04-26 | PXD030413 | JPOST Repository
ProteomicsDeep proteome analysis of initial meconium from human neonates for validation analysis
This project includes additional data of JPST002405. We conducted a deep proteomic analysis of meconium in 79 newborns to establish a meconium protein profile and gain insights into the underlying causes of neonatal diseases.
ORGANISM(S): Homo Sapiens (human) 
2024-05-30 | PXD050164 | JPOST Repository
ProteomicsDeep proteome analysis of initial meconium from human neonates
We conducted a deep proteomic analysis of meconium in 259 newborns to establish a meconium protein profile and gain insights into the underlying causes of neonatal diseases.
ORGANISM(S): Homo Sapiens (human) 
2024-05-30 | PXD047426 | JPOST Repository
ProteomicsIdentification of GDPP in cancer secretome
Prostate cancer cell lines were cultured with serum-free media, for 48 h. The cultured media were collected and lyophilized. The lyophilized media were dissolved in ammonium bicarbonate containing 4 M urea, and proteins were de-salted by acetone-precipitation and subjected to proteome analysis.
ORGANISM(S): Homo Sapiens (human) 
2025-01-01 | PXD045369 | JPOST Repository
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