Kessler B B - OmicsDI

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Unknown (990)
Proteomics (96)
Genomics (72)
Transcriptomics (31)
Metabolomics (8)
Genomic (1)

Organisms

Schizophyllum commune H4-8 (89)
Mycobacterium tuberculosis SP7 (89)
Oryza sativa Japonica Group (89)
Candidatus Endoriftia persephonae (89)
Mycobacterium tuberculosis SP10 (89)
Mycobacterium tuberculosis SP13 (89)
Mycobacterium tuberculosis SP22 (89)
Chlamydomonas reinhardtii (89)
Pyricularia oryzae P131 (89)
Enterococcus mundtii CRL35 (89)
Oncorhynchus tshawytscha (89)
Pseudomonas canadensis (89)
Strongylocentrotus purpuratus (89)
Influenza A virus (A/California/04/2009(H1N1)) (89)
Homo (89)
Pseudomonas aeruginosa PAO1H2O (89)
Human alphaherpesvirus 1 strain 17 (89)
Quercus petraea (89)
Canis lupus (89)
Mycobacterium tuberculosis SP1 (89)
Marchantia polymorpha subsp. ruderalis (89)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (89)
Methylocystis sp. (89)
Exiguobacterium sp. SH31 (89)
Palaemonetes sp. common grass shrimp associated circular virus (89)
Homo sapiens (83)
Mus musculus (15)
Sus scrofa (4)
Rattus norvegicus (1)
Drosophila melanogaster (1)

Repository

pride (89)
EGA (66)
biostudies-arrayexpress (37)
MetaboLights (7)
MassIVE (6)
dbGaP (1)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (17)
Cerebrospinal fluid (6)
Brain (6)
Kidney (6)
Permanent cell line cell (5)
Epithelial cell (5)
Blood (4)
Blood platelet (3)
Plant cell (3)
Skeletal muscle (3)
Bone (2)
Breast (2)
HEK-293T cell (2)
Bone marrow cell (2)
Lymph node (2)
Bone marrow (2)
Macrophage (2)
Blood plasma (2)
B cell (2)
Liver (2)
Platelet (2)
Blood cell (2)
T cell (2)
Dermis microvascular lymphatic vessel endothelial cell (1)
Fruit capsule (1)
Bone tissue (1)
Ewing's sarcoma cell line (1)
LN-229 cell (1)
Accessory sex gland (1)
Renal cortical epithelial cell (1)

Disease

Atypical teratoid rhabdoid tumor (3)
Breast cancer (3)
Meningitis (2)
Duchenne muscular dystrophy (2)
Neuroblastoma (2)
Acute leukemia (2)
Encephalitis (1)
Pain agnosia (1)
Viral encephalitis (1)
Hermansky-Pudlak syndrome (1)
Female breast cancer (1)
Oculopharyngeal muscular dystrophy (1)
End stage renal disease (1)
Bacterial meningitis (1)
Bone osteosarcoma (1)
Triple-receptor negative breast cancer (1)
Cryptococcal meningitis (1)
Permanent neonatal diabetes mellitus (1)
Inflammation (1)
Brain glioblastoma multiforme (1)
Spinal muscular atrophy (1)
Adult spinal muscular atrophy (1)
Lymphoma (1)
Inflammatory bowel disease (1)
Chronic myeloid leukemia (1)
Cervix carcinoma (1)
Atherosclerosis (1)
Cervical cancer (1)
Brain cancer (1)
Alzheimer's disease (1)

Technology Type

Mass Spectrometry (89)
Shotgun proteomics (62)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-independent acquisition (7)
Data-dependent acquisition (7)
Mass spectrometry (5)
Gel-based experiment (4)
SWATH MS (3)
Mass spectrometry assay (2)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Mass spectrometry imaging (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (3)
Liquid Chromatography MS - positive - reverse phase (3)
Orbitrap Fusion Lumos (2)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (2)
Illumina Hybridisation Oven (1)
Affymetrix GeneTitan system (1)
Affymetrix GeneChip HT MG-430 PM (1)
Illumina iScan (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
TimsTOF (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
ThermoFinnigan LTQ (1)

Publication Date

2026 (15)
2023 (15)
2015 (14)
2021 (11)
2025 (11)
2018 (11)
2024 (10)
2016 (9)
2020 (9)
2019 (7)
2014 (6)
2022 (6)
2013 (5)
2011 (4)
2012 (3)
2017 (2)
2009 (1)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:116314 (3)
CHEBI:137098 (2)
CHEBI:137096 (2)
CHEBI:137124 (2)
CHEBI:137125 (2)
CHEBI:16467 (2)
CHEBI:34900 (2)
CHEBI:30769 (2)
CHEBI:145681 (1)
CHEBI:141463 (1)
CHEBI: 16708 (1)
CHEBI: 173454 (1)
CHEBI: 6031 (1)
CHEBI: 74475 (1)
CHEBI: 89514 (1)
CHEBI: 15603 (1)
CHEBI: 15937 (1)
CHEBI: 84505 (1)
CHEBI: 132244 (1)
CHEBI: 88407 (1)
CHEBI: 16857 (1)
CHEBI: 75575 (1)
CHEBI: 88930 (1)
CHEBI: 88936 (1)
CHEBI: 38257 (1)
CHEBI: 15354 (1)
CHEBI: 89517 (1)
CHEBI: 16821 (1)
CHEBI: 15903 (1)
CHEBI: 76078 (1)

Metabolite Name

Lysophosphatidilcholine (2)
3-Benzyl-2-methyl-2-tridecanamine (2)
Hexadecylamine (2)
3-Hexenyl salicylic acid (2)
Palmitic amide (2)
Heptadecasphinganine (2)
Myristamide (2)
Coumarin (2)
Choline (2)
Oleamide (2)
Glycerophosphocholine (2)
SGE (SA glucose ester) (1)
SA (salicylic acid) (1)
2HNG (enolpyruvyl-N-glutamic acid) (1)
SAG (SA-glycoside) (1)
1,7-Octadiene (1)
Lysophospholipid (1)
Phosphatidylchloline (1)
3,3'-Iminodipropionitrile (1)
Oxidized phosphatidylinositol (1)
Oxidized phosphatidylethanolamines (1)
Feruloylquinic acid (1)
Flavonoid-3-O-glycosides (1)
Flavonoid 3-O-glycosides (1)
Kaempferol 7-O-glucoside (1)
Glycerophospholipid (1)
Oxidized ceramide (1)
Phosphatidic acid (1)
2-Nonenal, 4-oxo- (1)
Monoacylglyceride (1)

Modification

Not available (1)

Study type

Transcription profiling by array (22)
ChIP-seq (5)
RNA-seq of coding RNA (5)
Methylation profiling by array (2)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (123)
2023 (111)
2021 (109)
2025 (108)
2020 (90)
2024 (89)
2019 (54)
2015 (48)
2016 (47)
2018 (46)
2017 (44)
2014 (35)
2013 (22)
2012 (19)
2011 (19)
2026 (16)
2009 (11)
2010 (10)
2008 (8)
2004 (6)
2007 (4)
2006 (2)
2002 (2)
2003 (1)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, Edinburgh EH4 2XU, UK (3)
TDI Mass Spectrometry Laboratory, Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, Roosevelt Drive, Oxford OX3 7FZ, UK (3)
Target Discovery Institute, NDMRB, University of Oxford (2)
Director at Max Planck Institute of Biochemistry Department Proteomics und Signaltransduktion Am Klopferspitz 18, 82152 Martinsried (2)
Discovery Proteomics Facility, University of Oxford (2)
Target Discovery Institute, University of Oxford (2)
Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (2)
Head of Discovery Proteomics Facility Oxford (1)
Heidelberg University Hospital, Department of Neurology (1)
Proteomics and Metabolomics Facility, MRC London Institute of Medical Sciences, Hammersmith Hospital Campus, Du Cane Rd, London W12 0NN (1)
Discovery Proteomics Facility, Target Discovery Institute,University of Oxford (1)
University of Oxford, The Jenner Inistitute (1)
Institute of Functional Genomics, Universtiy of Regensburg, Germany (1)
Institut fuer Biochemie und Biotechnologie (1)
1BHF Centre of Research Excellence, Division of Cardiovascular Medicine, Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, UK (1)
Discovery Proteomics Lab, University of Oxford (1)
NDM Research Building | Old Road Campus | Oxford OX3 7FZ (1)
Discovery Proteomics Facility, Oxford (1)
Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, The Old Road Campus, Oxford, OX3 7FZ, UK (1)
Nuffield Department of Clinical Neurosciences, University of Oxford, UK (1)
RC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS 2Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, EH4 2XU, Edinburgh, UK (1)
Target Discovery Institute Nuffield Department of Medicine (1)
Genome Integrity and DNA Repair Core Group, Hungarian Centre of Excellence for Molecular Medicine (HCEMM), Szeged, H-6728, Hungary (1)
COI-NDM Univesity of Oxford (1)
Oxford University Clinical Research Unit National Hospital for Tropical Diseases Hanoi, Viet Nam (1)
Brain tumor translational targets German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany (1)
Laboratory of Cancer Biology, Department of Oncology, University of Oxford Old Road Campus Research Building, Oxford, OX3 7DQ, United Kingdom (1)

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A variant NuRD complex containing PWWP2A/B excludes MBD2/3 to regulate transcription at active genes

Transcriptional regulation by chromatin is a highly dynamic process directed through the recruitment and coordinated action of epigenetic modifiers and readers of these modifications. Using an unbiased proteomic approach to find interactors of H3K36me3, a modification enriched on active chromatin, w...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2018-07-19 | PXD010445 | Pride

Targeting G1–S Checkpoint–Compromised Cancers with Cyclin A/B RxL Inhibitors

Cancer cell proliferation requires precise control of E2F1 activity; excess activity promotes apoptosis. Here, we developed cell-permeable and bioavailable macrocycles that selectively kill small cell lung cancer (SCLC) cells with inherent high E2F1 activity by blocking RxL-mediated interactions of ...

ORGANISM(S): Homo sapiens (Human)

2025-05-30 | PXD055112 | Pride

Macrocycle Cyclin a E2f Cyclin b Cy/rxl motif Cdk2 Sac Synthetic lethality

The complete mitochondrial genome of Schizothorax eurystomus Kessler, 1872 (Cypriniformes, Cyprinidae).

Not available

S-EPMC9665088 | biostudies-literature

Neuronal loss and brain atrophy in mice lacking cathepsins B and L.

Not available

S-EPMC122989 | biostudies-literature

Fully automated, internally controlled quantification of hepatitis B Virus DNA by real-time PCR by use of the MagNA Pure LC and LightCycler instruments.

Not available

S-EPMC344446 | biostudies-literature