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ProteomicsCOL1 database samples for the Late Pleistocene of Western Eurasia
The project aimed to characterize the collagen type I (COL1) sequences from various modern, Holocene and Pleistocene bone, antler and skin samples for phylogenetic purposes. All extractions were performed at BioArCh, University of York (UK) or the Department of Human Evolution, MPI-EVA (Germany). An...
ORGANISM(S): Ursus americanus (American black bear) (Euarctos americanus) Capreolus capreolus (Roe deer) Aepyceros melampus Crocuta crocuta (Spotted hyena) Vulpes vulpes (Red fox) Castor fiber (Eurasian beaver) Capra ibex (Ibex) Cuon alpinus (Dhole) Panthera leo (Lion) Saiga tatarica (Saiga antelope) Cervus elaphus (Red deer) Meles meles (Eurasian badger) Gulo gulo (Wolverine) (Gluton) Rupicapra rupicapra (Chamois) Coelodonta antiquitatis (woolly rhinoceros) Lynx lynx (Eurasian lynx) (Felis lynx) Alces alces (Eurasian elk) Ursus maritimus (Polar bear) (Thalarctos maritimus) Lutra lutra (European river otter) Vulpes lagopus (Arctic fox) (Alopex lagopus) Megaloceros giganteus (Giant deer) (Alces gigantea) Axis axis (Axis deer) (Chital) Martes martes (European pine marten) Ursus arctos (Brown bear) (Grizzly bear) Rangifer tarandus (Reindeer) (Cervus tarandus) Equus hydruntinus 
2016-09-27 | PXD003190 | Pride
Lc-ms/ms Mammalia Q-exactive hybrid quadrupole-orbitrap ms De novo collagen sequencing 
ProteomicsPalaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne.
The project aimed to characterize the protein composition from 3 Pleistocene bone specimens (AR-7, AR-16, AR-30). Analysed extracts concern standard ZooMS tryptic digests (AR-7, AR-16, AR-30) and additional palaeoproteomic extracts (AR-30A and AR-30B). The latter concern two biological duplicates. A...
ORGANISM(S): Homo 
2016-09-27 | PXD003208 | Pride
Lc-ms/ms Q-exactive hybrid quadrupole-orbitrap ms Homo sp. 
ProteomicsAncient proteins resolve the evolutionary history of Darwin's South American ungulates
The project aimed to characterize the collagen type I (COL1) sequences from Pleistocene Macrauchenia sp. and Toxodon sp. bone samples, and by comparison with existing COL1 sequences available from genomic sources establish the phylogenetic position of both extinct species. In order to resolve their ...
ORGANISM(S): unidentified Equus Orycteropus afer (Aardvark) Cyclopes didactylus (Silky anteater) (Myrmecophaga didactyla) Hippopotamus amphibius (Hippopotamus) Tapirus terrestris (Lowland tapir) (Brazilian tapir) Mylodon darwinii (Giant ground sloth) 
2015-03-19 | PXD001411 | Pride
Lc-ms/ms Macrauchenia Toxodon Bruker maxis hd De novo collagen sequencing Pleistocene Thermo scientific hybrid quadrupole-orbitrap 
ProteomicsMineral-bound ostrich eggshell peptides survive for up to 3.8 Ma in equatorial Africa
Claims for exceptional preservation of biomolecules in the fossil record are contested. Here we demonstrate the role of surface stabilisation in significantly prolonging protein sequence survival to ~3.8 million years. The intracrystalline environment of calcite ostrich (Struthionidae) eggshell enca...
ORGANISM(S): Struthio camelus (Ostrich) 
2018-07-16 | PXD003786 | Pride
Molecular dynamics Mineral binding Proteomics Struthiocalcin Eggshell Lc-ms/ms 
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