Kim Min M - OmicsDI

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Unknown (1217)
Proteomics (824)
Transcriptomics (412)
Metabolomics (110)
Genomics (82)
Multiomics (78)
Genomic (1)

Organisms

Homo sapiens (630)
Mus musculus (249)
Arabidopsis thaliana (44)
Saccharomyces cerevisiae (30)
Escherichia coli (29)
Caenorhabditis elegans (21)
Drosophila melanogaster (21)
Rattus norvegicus (20)
Escherichia coli str. K-12 substr. MG1655 (8)
Glycine max (8)
Bacillus amyloliquefaciens (7)
Triticum aestivum (7)
Streptomyces venezuelae (6)
Schizosaccharomyces pombe (4)
Salmo salar (4)
Sus scrofa (4)
Bos taurus (4)
Ogataea angusta (2)
Vibrio vulnificus (2)
Daphnia magna (2)
Lepidium sativum (2)
Medicago truncatula (2)
Campylobacter jejuni (2)
Pseudomonas putida KT2440 (2)
Escherichia coli K-12 (2)
Gallus gallus (2)
rat gut metagenome (1)
Agrobacterium tumefaciens (1)
Botrytis cinerea B05.10 (1)
Burkholderia glumae BGR1 (1)

Repository

pride (697)
biostudies-arrayexpress (465)
MetaboLights (108)
PeptideAtlas (95)
EGA (33)
PAXDB (16)
MassIVE (13)
GNPS (2)
dbGaP (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (163)
Brain (52)
Epithelial cell (49)
Blood plasma (29)
Kidney (28)
Others (24)
Permanent cell line cell (24)
Liver (22)
Fibroblast (19)
Leaf (19)
Blood (16)
Blood serum (14)
Heart (13)
Lung (12)
T cell (12)
Digestive System (11)
B cell (11)
Stem cell (11)
Early embryonic cell (9)
Heart (6)
Liver (6)
Male Reproductive System (6)
Female Reproductive System (5)
Brain (4)
Adrenal Gland (3)
Eye (3)
Kidney (3)
Lung (3)
Pancreas (2)
Urinary Bladder (2)

Disease

Breast cancer (23)
Disease free (21)
Acute leukemia (15)
Colon cancer (11)
Brain cancer (8)
Malignant neoplasm of ovary (8)
Prostate adenocarcinoma (8)
Melanoma (7)
Parkinson's disease (7)
Cervix carcinoma (6)
Type 2 diabetes mellitus (6)
Cardiovascular system disease (5)
Lung cancer (5)
Alzheimer's disease (4)
Pancreatic cancer (4)
Severe acute respiratory syndrome (4)
Brain glioblastoma multiforme (3)
Pancreatic ductal adenocarcinoma (3)
Wounds and Injuries (3)
Infiltrating ductal carcinoma (2)
Autistic disorder (2)
COVID-19 (2)
Cervical adenocarcinoma (2)
Chronic kidney disease (2)
Chronic lymphocytic leukemia (2)
Glioblastoma (2)
Hepatocellular carcinoma (2)
HPV positive (1)
Papillary renal cell carcinoma (1)
Phyllodes tumor (1)

Technology Type

Mass Spectrometry (697)
Shotgun proteomics (388)
Bottom-up proteomics (126)
Affinity purification coupled with mass spectrometry proteomics (103)
Mass spectrometry (93)
Data-dependent acquisition (77)
Gel-based experiment (51)
SWATH MS (23)
Top-down proteomics (21)
Data-independent acquisition (18)
Mass spectrometry assay (10)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
NMR spectroscopy (7)
SRM/MRM (7)
All-ion fragmentation (3)
HDMSE (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
DiaPASEF (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

LTQ Orbitrap Elite (50)
LTQ Orbitrap Velos (37)
Liquid Chromatography MS - positive - reverse phase (29)
Liquid Chromatography MS - negative - reverse phase (23)
Illumina HiSeq 2000 (12)
Illumina HiSeq 2500 (11)
Illumina NovaSeq 6000 (11)
5975C Series GC/MSD (Agilent) (10)
Liquid Chromatography MS - negative - hilic (10)
Liquid Chromatography MS - positive - hilic (10)
Exactive (Thermo Scientific) (7)
NextSeq 500 (6)
GenePix 4000B [Axon Instruments] (4)
Axon- GenePix4000B (3)
Other (2)
Illumina HiSeq 4000 (2)
LTQ Orbitrap (2)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
I686 (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Q Exactive Plus (1)
TSQ Quantis (1)
LTQ Orbitrap Velos Pro (1)
MS:1000031 (1)
Orbitrap Astral (1)
Q Exactive HF (1)
Q Exactive HF-X (1)

Publication Date

2014 (196)
2023 (126)
2025 (118)
2021 (99)
2022 (95)
2026 (93)
2024 (86)
2020 (68)
2015 (67)
2013 (63)
2016 (60)
2019 (54)
2018 (47)
2010 (45)
2011 (40)
2012 (33)
2017 (32)
2005 (18)
2009 (15)
2008 (15)
2006 (13)
2007 (9)
2004 (4)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

ENSEMBL ID

ENSG00000170477 (76)
ENSG00000229353 (51)
ENSG00000147251 (29)
ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)

CHEBI ID

CHEBI:30769 (33)
CHEBI:15741 (31)
CHEBI:17368 (30)
CHEBI:15428 (29)
CHEBI:17568 (29)
CHEBI:17596 (27)
CHEBI:32816 (27)
CHEBI:18012 (26)
CHEBI:15354 (25)
CHEBI:16335 (25)
CHEBI:16708 (24)
CHEBI:16919 (24)
CHEBI:28044 (24)
CHEBI:6650 (24)
CHEBI:16449 (23)
CHEBI:16704 (23)
CHEBI:17154 (23)
CHEBI:15891 (22)
CHEBI:16737 (22)
CHEBI:27266 (22)
CHEBI:16027 (21)
CHEBI:17754 (21)
CHEBI:17821 (21)
CHEBI:17895 (21)
CHEBI:17992 (21)
CHEBI:30915 (21)
CHEBI:15756 (20)
CHEBI:16015 (20)
CHEBI:17268 (20)
CHEBI:17750 (20)

Metabolite Name

Glycine (15)
Uracil (15)
Adenosine (14)
Hypoxanthine (14)
Alanine (13)
Choline (13)
Inosine (13)
Myo-inositol (13)
Fructose (12)
Adenine (11)
Adenosine (11)
Cholesterol (11)
Inosine (11)
Tryptophan (11)
Uracil (11)
Uridine (11)
Adenine (10)
Creatine (10)
Creatinine (10)
Fumarate (10)
Glycerol (10)
Glycine (10)
Isoleucine (10)
Lactate (10)
Nicotinamide (10)
Phenylalanine (10)
Proline (10)
Taurine (10)
Valine (10)
Xanthine (10)

Modification

Not available (3)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (1)
56.026215 (1)
57.021464 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (239)
RNA-seq of coding RNA (76)
ChIP-seq (41)
ChIP-chip by tiling array (18)
Methylation profiling by array (14)
Comparative genomic hybridization by array (12)
Unknown experiment type (10)
Methylation profiling by high throughput sequencing (7)
ChIP-chip by array (6)
Other (5)
RNA-seq of coding RNA from single cells (5)
RNA-seq of non coding RNA (5)
Transcription profiling by SAGE (4)
High-throughput sequencing (4)
Cell line - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
GRO-seq (1)
Cell line - Single-cell sequencing (1)
One-color microarray (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
RNAi profiling by array (1)
CLIP-seq (1)
ATAC-seq (1)
RIP-seq (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (170)
2023 (138)
2021 (138)
2020 (130)
2024 (129)
2025 (119)
2014 (105)
2015 (99)
2013 (89)
2016 (85)
2019 (69)
2018 (65)
2017 (57)
2010 (56)
2012 (52)
2011 (52)
2026 (34)
2009 (23)
2005 (21)
2008 (16)
2006 (14)
2007 (12)
2004 (6)
2003 (1)
1999 (1)
1997 (1)

Lab affiliation

Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (15)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (14)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (9)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (7)
The University of Melbourne (6)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (5)
Daegu Catholic University School of Medicine (5)
Pacific Northwest National Laboratory (5)
Baylor College of Medicine (4)
School of Pharmacy, Sungkyunkwan University, South Korea (4)
Seoul National University (4)
Assistant professor, School of Biological Sciences, Seoul National University (3)
BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (3)
Biological Sciences Division, Pacific Northwest National Laboratory (3)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences (3)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University (3)
Department of Chemistry, Korea University (3)
Department of Neurological Surgery, Washington University in St. Louis School of Medicine (3)
Department of Pathology, Dalhousie University (3)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (3)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (3)
Korea Institute of Science and Technology (3)
Kyung Hee University (3)
University of Toronto (3)
Yonsei university (3)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (2)
Associate Professor (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Cambridge Institute for Medical Research, University of Cambridge (2)
Cedars-Sinai Medical Center (2)

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DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Plasma kidney injury molecule-1 (p-KIM-1) levels and deterioration of kidney function over 16 years.

Not available

S-EPMC7049260 | biostudies-literature

Tolerability, effectiveness and predictive parameters for the therapeutic usefulness of exenatide in obese, Korean patients with type 2 diabetes.

Not available

S-EPMC4188114 | biostudies-literature

Deep Learning-Based Survival Analysis Identified Associations Between Molecular Subtype and Optimal Adjuvant Treatment of Patients With Gastric Cancer.

Not available

S-EPMC6873983 | biostudies-literature

Plasma and Urinary KIM-1 in Chronic Kidney Disease: Prognostic Value, Associations with Albuminuria, and Implications for Kidney Failure and Mortality.

Not available

S-EPMC12503817 | biostudies-literature

Weekly docetaxel and gemcitabine in previously treated metastatic esophageal squamous cell carcinoma.

Not available

S-EPMC4394089 | biostudies-literature

Expanding the view of a standard colonoscope with the Third Eye Panoramic cap.

Not available

S-EPMC4588091 | biostudies-literature

Ceramide Promotes Lytic Reactivation of Epstein-Barr Virus in Gastric Carcinoma

Epstein-Barr virus (EBV) has a lifelong latency period after initial infection. Rarely, however, when the EBV immediate early gene BZLF1 is expressed by a specific stimulus, the virus switches to the lytic cycle to produce progeny viruses. We found that EBV infection reduced levels of various cerami...

2023-12-20 | MTBLS7649 | MetaboLights

Psychometric properties of the Korean version of the Health Literacy on Social Determinants of Health Questionnaire (K-HL-SDHQ).

Not available

S-EPMC6860445 | biostudies-literature

Identifying Novel Small RNA Biomarkers for Patients with Gastric Cancer

The biomarker development study consisted of two parts: discovery and validation. The first part was the discovery and verification phase of biomarkers using two different platforms: transcriptomic and miRNA. The salivary transcriptomes of 63 GC samples and 31 non-GC controls were profiled using ...

phs001767 | dbGaP

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2649 Results

Show results for

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

Modification

Study type

Release Date

Lab affiliation

OmicsDI is part of the ELIXIR infrastructure

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