Kim S-W SW - OmicsDI

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Unknown (512)
Transcriptomics (12)
Proteomics (5)
Metabolomics (3)
Genomics (1)

Organisms

Homo sapiens (8)
Mus musculus (5)
Zea mays (4)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (13)
pride (5)
MetaboLights (3)

Tissue

Cell culture (1)
Embryonic stem cell (1)
Fibroblast (1)
MEF cell (1)
Pancreas (1)

Disease

Normal (1)
Disease free (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (5)
Mass spectrometry (2)
Bottom-up proteomics (2)
Shotgun proteomics (2)
NMR spectroscopy (1)
Gel-based experiment (1)

Instrument Platform

NextSeq 500 (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Bruker (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Varian (1)

Publication Date

2009 (3)
2023 (2)
2012 (2)
2011 (2)
2008 (2)
2025 (2)
2015 (1)
2013 (1)
2010 (1)
2017 (1)
2016 (1)
2026 (1)
2021 (1)
2019 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:17234 (3)
CHEBI:30769 (3)
CHEBI:15354 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:16000 (2)
CHEBI:16119 (2)
CHEBI:16414 (2)
CHEBI:16449 (2)
CHEBI:16865 (2)
CHEBI:16919 (2)
CHEBI:16958 (2)
CHEBI:16977 (2)
CHEBI:17191 (2)
CHEBI:17203 (2)
CHEBI:17268 (2)
CHEBI:17295 (2)
CHEBI:17497 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:17895 (2)
CHEBI:18012 (2)
CHEBI:18132 (2)
CHEBI:18185 (2)
CHEBI:18237 (2)
CHEBI:22470 (2)
CHEBI:25017 (2)
CHEBI:27693 (2)

Metabolite Name

(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(22E)-3beta-Hydroxy-5alpha-chola-7,22-dien-24-oic Acid (1)
(2E,4Z)-Decadienoylcarnitine (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2S,4S)-Monatin (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3b,6b,8b,12a)-8,12-Epoxy-7(11)-eremophilene-6-angeloyloxy-8,12-dimethoxy-3-ol (1)
(4E,15E)-Bilirubin (1)
(4E,8E,10E-d18:3)sphingosine (1)
(5alpha,8beta,9beta)-5,9-Epoxy-3,6-megastigmadien-8-ol (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(6E,9E,12E,15E,18E,21E)-tetracosa-6,9,12,15,18,21-hexaenoic acid (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
(7Z)-14-hydroxy-10,13-dioxoheptadec-7-enoic acid (1)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (1)
(9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9S,13S)-1a,1b-dihomo-jasmonic acid (1)
(9Z,11R,12S,13S,15Z)-12,13-Epoxy-11-hydroxy-9,15-octadecadienoic acid (1)
(E)-2-Methyl-2-buten-1-ol O-beta-D-Glucopyranoside (1)
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (3)
Genotyping by array (1)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (68)
2025 (61)
2024 (56)
2021 (55)
2023 (53)
2018 (36)
2020 (33)
2019 (28)
2015 (22)
2017 (21)
2016 (18)
2012 (13)
2026 (13)
2014 (11)
2013 (9)
2009 (7)
2008 (6)
2011 (5)
2010 (5)
2003 (2)
2007 (1)
2006 (1)
2000 (1)

Lab affiliation

1. Department of Chemistry, Korea University, Seoul 02841, Republic of Korea 2. Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea (1)
Biogen Inc., 225 Binney St, Cambridge, MA 02142, USA; Laboratory of Inflammation Research, School of Life Science, Handong Global University, 558 Handong-ro, Buk-gu, Pohang, Gyeongbuk 37554, Republic of Korea (1)
Department of Applied Chemistry, Kyung Hee University, Yongin-si, Gyeonggi-do 446-701, South Korea (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Life Sciences, Korea University, Seoul 02841, Republic of Korea (1)

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Harnessing an RNA-mediated chaperone for the assembly of influenza hemagglutinin in an immunologically relevant conformation.

Not available

S-EPMC5901386 | biostudies-literature

FGF21 induced by carbon monoxide mediates metabolic homeostasis via the PERK/ATF4 pathway.

Not available

S-EPMC5901375 | biostudies-literature

Coenzyme Q₁₀ alleviates tacrolimus-induced mitochondrial dysfunction in kidney.

Not available

S-EPMC6902707 | biostudies-literature

Growth of mycobacteria on carbon monoxide and methanol.

Not available

S-EPMC141938 | biostudies-literature

An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

Identification of the acetylated lysine residues of Dnmt3L protein in murine embryonic stem cells

The core purpose of this project is to identify the novel epigenetic factors which play a crucial role on regulating stem cells developed from embryo development to ageing through the longitudinal analysis of their transcriptome, protein interactome, and post- translational modification network. Thu...

ORGANISM(S): Mus musculus (Mouse)

2025-05-26 | PXD032953 | Pride

Comprehensive evaluation of RNAlater effect on proteome and phosphoproteome

Tumors such as pancreatic cancer contain a variety of enzymes including DNases, RNases and proteases which may lead to autolysis of DNA, RNA and proteins during sample processing. In general, RNAlater can be used to keep nucleic acids intact since it contains high concentrations of quaternary ammoni...

ORGANISM(S): Homo sapiens (Human)

2019-05-06 | PXD010710 | Pride

Rnalater Proteome Phosphoproteome

Phase Formation Behavior and Thermoelectric Transport Properties of S-Doped FeSe_2-xS_x Polycrystalline Alloys.

Not available

S-EPMC9784414 | biostudies-literature

Identification of Tie2 as a sensor for reactive oxygen species and its therapeutic implication

Psoriasis is a chronic inflammatory disease characterized by hyperproliferation of keratinocytes and abnormal blood vessels. As hyperproliferation is driven by pro-inflammatory cytokines produced by activated immune cells, therapeutic strategies often target these cytokines to manage the disease. Ho...

ORGANISM(S): Homo sapiens (Human)

2025-01-28 | PXD058810 | Pride

Human oxidation eclipse

Characterization of the Seed Biopriming, Plant Growth-Promoting and Salinity-Ameliorating Potential of Halophilic Fungi Isolated from Hypersaline Habitats.

Not available

S-EPMC10003710 | biostudies-literature

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533 Results

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