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MetabolomicsAnalysis of seed germination attributes and kinetics of Polygonatum sibiricum Red. through metabolomics and transcriptomics

Polygonatum sibiricum Red. (P. sibiricum) seeds exhibit strong dormancy, which prolongs germination period, reduces germination rate, and thus hinders its production. Research on breaking seed dormancy via optimized sand storage and clarifying germination-related mechanisms is insufficient. This ...

2026-03-24 | MTBLS14022 | MetaboLights
MetabolomicsDual transcriptomic & metabolomic analysis of elicited flax sheds light on the kinetics of immune defense activation against the biotrophic pathogen Oidium lini.
Flax (Linum usitatissimum) grown under controlled conditions displayed genotype-dependent resistance to powdery mildew (Oidium lini) following COS-OGA (comprising chitosan- and pectin-derived oligomers) elicitor application. The present study reveals a two-step immune response in plant...
2025-04-25 | MTBLS8263 | MetaboLights
TranscriptomicsAnalysis of on-chip hybridization kinetics for optimization of gene expression experiments.
DNA microarray technology is a powerful tool for getting the overview of gene expression in biological samples. Although the successful application of microarray-based expression analysis was demonstrated in a number of applications, the main problem with this approach is the fact that expression le...
ORGANISM(S): Mus musculus 
2007-09-29 | E-GEOD-7574 | biostudies-arrayexpress
GenomicsGenomic encoding of transcriptional burst kinetics
Genomic encoding of transcriptional burst kinetics
PRJEB27984 | ENA
GenomicsGenomic encoding of transcriptional burst kinetics
Genomic encoding of transcriptional burst kinetics
PRJEB24425 | ENA
ProteomicsProtein misfolding involving entanglements provides a structural explanation for the origin of stretched-exponential refolding kinetics
Stretched-exponential protein refolding kinetics, first observed decades ago, were attributed to a nonnative ensemble of structures with parallel, non-interconverting folding pathways. However, the structural origin of the large energy barriers preventing interconversion between these folding pathwa...
ORGANISM(S): Escherichia coli 
2025-03-18 | PXD053582 | Pride
Folding Crosslinking mass spectrometry Stretched-exponential kinetics 
ProteomicsMaturation kinetics of a multiprotein complex revealed by metabolic labeling
The project aims at computing in vivo co-assembly kinetics from metabolomic-inspired approaches. In short, we performed reciprocal pull-down experiments from complex cellular components at different time points following pulsed-SILAC metabolic labeling. We applied the method to 320 pairs of yeast nu...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-10-16 | PXD018034 | Pride
Data independent acquisition Maturation kinetics Yeast Pulsed silac Nuclear pore complex 
ProteomicsProtein misfolding involving entanglements provides a structural explanation for the origin of stretched-exponential refolding kinetics
Stretched-exponential protein refolding kinetics, first observed decades ago, were attributed to a nonnative ensemble of structures with parallel, non-interconverting folding pathways. However, the structural origin of the large energy barriers preventing interconversion between these folding pathwa...
ORGANISM(S): Escherichia coli 
2025-03-18 | PXD053579 | Pride
Limited proteolisys mass spectrometry Stretched-exponential kinetics Refolding 
GenomicsKinetics-seq enables comprehensive profiling of single-cell RNA kinetics in vivo to reveal dynamic tumor heterogeneity
Kinetics-seq enables comprehensive profiling of single-cell RNA kinetics in vivo to reveal dynamic tumor heterogeneity
PRJNA1372032 | ENA
TranscriptomicsTranscription profiling of human cord blood-derived mesenchymal stem cells with distinct growth kinetics, differentiation potentials
Phenotypic heterogeneity has been observed among mesenchymal stem/stromal cell (MSC) populations, but specific genes associated with this variability have not been defined. To study this question, we analyzed two distinct MSC populations isolated from the same umbilical cord blood (UCB) sample. The...
ORGANISM(S): Homo sapiens 
2008-06-14 | E-GEOD-6029 | biostudies-arrayexpress
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