Kk - OmicsDI

Show results for

Unknown (17346)
Proteomics (316)
Transcriptomics (269)
Genomics (96)
Metabolomics (29)
Models (2)
Methylation profiling (1)
Other (1)
Multiomics (1)

Organisms

Mus musculus (94)
Homo sapiens (92)
Rhizobium leguminosarum (26)
Caenorhabditis elegans (25)
Drosophila melanogaster (18)
Candida albicans (8)
Arabidopsis thaliana (8)
Rattus norvegicus (8)
Saccharomyces cerevisiae (7)
Danio rerio (6)
Bos taurus (3)
Populus fremontii x Populus angustifolia (2)
Chlamydomonas reinhardtii (2)
Zea mays (2)
Xenopus laevis (1)
Cardamine flexuosa (1)
Diospyros lotus (1)
Oncorhynchus nerka (1)
delta proteobacterium NaphS2 (1)
Capra hircus (1)
Populus tremuloides (1)
Leishmania donovani (1)
Leishmania major (1)
Heliconius melpomene rosina (1)
Drosophila simulans (1)
Equus caballus (1)
Oryza sativa Indica Group (1)
Aspergillus fumigatus Af293 (1)
Nakaseomyces glabratus (1)
Glycine max (1)

Organisms

Mus musculus (25)
Homo sapiens (5)
Caenorhabditis sp. 8 KK-2011 (2)
Bandra megavirus (1)
Xenia sp. KK-2018 (1)
Caenorhabditis monodelphis (1)
Bacteriophage sp. (1)
Elizabethkingia bruuniana (1)
Drosophila melanogaster (1)
Bos taurus (1)
Sus scrofa (1)

Repository

biostudies-arrayexpress (280)
pride (230)
ENA (55)
MassIVE (37)
geo (24)
MetaboLights (24)
PeptideAtlas (17)
PAXDB (16)
EGA (9)
jPOST (7)
iProX (5)
GNPS (4)
BioModels (2)
PanoramaPublic (2)
GPMDB (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (48)
Brain (20)
Epithelial cell (18)
B cell (10)
Blood plasma (9)
Fibroblast (9)
Lung (8)
Liver (7)
Macrophage (7)
Retina (6)
Kidney (5)
Venom (5)
Blood (4)
Leaf (4)
Skin (4)
Stem cell (4)
Urine (4)
Whole body (4)
Blood cell (3)
Blood serum (3)
Bone marrow (3)
Breast (3)
Heart (3)
Monocyte (3)
Oral epithelium (3)
Ovary (3)
Pancreas (3)
Primary cell (3)
Spleen (3)
Blood (1)

Disease

Breast cancer (6)
Alzheimer's disease (5)
Disease free (5)
Multiple myeloma (5)
Cardiovascular system disease (3)
Pancreatic cancer (3)
Acute leukemia (2)
COVID-19 (2)
Cervix carcinoma (2)
Colon cancer (2)
Colorectal cancer (2)
Glaucoma (2)
Histoplasmosis (2)
Malignant neoplasm of ovary (2)
Myopia (2)
Non-small cell lung carcinoma (2)
Oral cavity cancer (2)
Locally advanced rectal cancer (1)
Reference (1)
Murine hereditary hemochromatosis (1)
Not Available (1)
Diabetes (1)
Acute myeloid leukemia (1)
Alzheimer's disease 3 (1)
Alzheimer's disease 4 (1)
Aortic aneurysm (1)
Bone marrow (1)
Brain glioblastoma multiforme (1)
Burkitt lymphoma (1)
Diffuse pulmonary fibrosis (1)

Technology Type

Mass Spectrometry (231)
Shotgun proteomics (138)
Bottom-up proteomics (38)
Affinity purification coupled with mass spectrometry proteomics (29)
Mass spectrometry (16)
Data-dependent acquisition (14)
SWATH MS (13)
Data-independent acquisition (12)
Gel-based experiment (11)
NMR spectroscopy (8)
SRM/MRM (7)
Top-down proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
DiaPASEF (2)
Mass spectrometry assay (1)
ESI (1)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

BGISEQ-500 (19)
Q Exactive (10)
LTQ Orbitrap Velos (6)
Q Exactive Plus (6)
Orbitrap Fusion Lumos (6)
DNBSEQ-T7 (4)
ScanArray scanning hardware (3)
6510 Quadrupole Time-of-Flight LC/MS (3)
Orbitrap Eclipse (3)
Orbitrap Fusion (3)
Q Exactive HF-X (3)
NextSeq 550 (2)
Agilent 5975C Series GC/MSD (2)
LTQ Orbitrap (2)
LTQ Orbitrap Elite (2)
Microcentrifuge (1)
Agilent DNA Microarray Scanner Model #G2565BA (1)
AB SOLiD 4 System (1)
GenePix Professional 4200A [Axon Instruments] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
MaXis (1)
Instrument (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
Orbitrap Exploris 240 (1)

Publication Date

2014 (60)
2022 (56)
2010 (43)
2021 (42)
2025 (39)
2023 (36)
2011 (36)
2013 (35)
2019 (31)
2020 (30)
2018 (30)
2024 (29)
2012 (28)
2016 (27)
2026 (25)
2015 (23)
2009 (21)
2017 (17)
2008 (13)
2007 (8)
2006 (8)
2005 (3)
2003 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
P32485 (1)
Q00055 (1)
P23900 (1)
P39932 (1)
P09560 (1)
Q90W58 (1)
Q05116 (1)
P26696 (1)

ENSEMBL ID

ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)
ENSDARG00000027355 (17)
ENSDARG00000029406 (17)
ENSDARG00000031164 (17)

CHEBI ID

CHEBI:16449 (11)
CHEBI:15428 (10)
CHEBI:78320 (9)
CHEBI:30769 (9)
CHEBI:17754 (8)
CHEBI:15891 (8)
CHEBI:15741 (8)
CHEBI:17234 (7)
CHEBI:27266 (7)
CHEBI:15366 (7)
CHEBI:25094 (7)
CHEBI:17268 (7)
CHEBI:15354 (7)
CHEBI:17822 (6)
CHEBI:26271 (6)
CHEBI:18186 (6)
CHEBI:25017 (6)
CHEBI:18257 (6)
CHEBI:6650 (6)
CHEBI:18132 (6)
CHEBI:16919 (6)
CHEBI:15356 (5)
CHEBI:16811 (5)
CHEBI:25728 (1)
CHEBI:27082 (1)
CHEBI:16905 (1)
CHEBI:17665 (1)
CHEBI:16236 (1)
CHEBI:30089 (1)
CHEBI:15361 (1)

Metabolite Name

Alanine (7)
Glycine (6)
Taurine (6)
Glucose (6)
Acetate (5)
Lactate (4)
Valine (4)
Choline (4)
Malic acid (4)
Lactate (4)
Succinate (4)
Urea (4)
Creatine (4)
Propionate (3)
3-Oxotetradecanoyl-CoA (3)
Guanosine 3'-diphosphate 5'-triphosphate (3)
Deoxyuridine triphosphate (3)
Iohexol (3)
2-Hexaprenyl-6-methoxyphenol (3)
Triazolam (3)
Chlorobenzene (3)
DCTP (3)
Histidine (3)
Formate (3)
Leucine (3)
SM(d18:0/16:0) (3)
Oxalic acid (3)
Uridine (3)
Serine (3)
Proline (3)

First Public Date

2014 (9)
2019 (8)
2024 (7)
2026 (6)
2023 (4)
2021 (4)
2018 (4)
2025 (3)
2022 (3)
2017 (3)
2020 (2)
2015 (2)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Pacific Northwest National Laboratory (7)
Pacific Northwest National Laboratory, USA (5)
Biological Sciences Division, Pacific Northwest National Laboratory (3)
Department of Molecular Biology, Princeton University (3)
Department of Molecular Biology, Princeton University, USA (3)
Dept. of Laboratory Medicine, University of California, San Francisco, CA (3)
Indiana University School of Medicine (3)
Institute of Bioinformatics, Bangalore, Karnataka, India (3)
University of Washington (3)
Department of Biotechnology and Bioinformatics, Faculty of Chemistry, Rzeszow University of Technology, Powstańców Warszawy 6, 35-959 Rzeszów, Poland (2)
Department of Laboratory Medicine and Pathology & Center for Individualized Medicine Mayo Clinic Rochester MN 55905, USA (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (2)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
Faculty of Chemistry, Rzeszow University of Technology, Rzeszów, Poland (2)
Institut für Kardiovaskuläre Physiologie, Goethe-Universität, Frankfurt am Main, Germany (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia. (2)
Professor Laboratory Medicine and Pathology Mayo Clinic, Rochester, MN, USA (2)
Research Unit Protein Science, Helmholtz Zentrum München (2)
Scripps Institution of Oceanography, University of California (2)
St. Jude Children's Research Hospital (2)
University of California, San Francisco (2)
1 German Cancer Research Center (DKFZ), Heidelberg, Germany 2 Heidelberg University, Medical Faculty, Heidelberg, Germany (lab head) (1)
1. Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong 2. Centre for Eye and Vision Research (CEVR), 17W Hong Kong Science Park, Hong Kong 3. Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University, Hong Kong (1)
Akhilesh Pandey, M.D, Ph.D. 527 Miller Research Building 733 N. Broadway Baltimore, MD 21205 (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Associate Professor of Oncological Sciences Huntsman Cancer Institute at the University of Utah (1)
Associate Professor, Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong SAR (1)
Associate Professor, Laboratory of Experimental Optometry, Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong (1)
BCI Mass spectrometry Facility 1.02 & 1.03 1st floor Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)

IsPrivate

False (2)

Classification

viruses (2)

Modification

4x(15)N labeled L-arginine (3)
10.008269 (2)
15.994915 (2)
42.010565 (2)
45.029395 (2)
58.005479 (2)
-17.026549 (1)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (168)
RNA-seq of coding RNA (46)
ChIP-seq (31)
RNA-seq of non coding RNA (9)
Unknown experiment type (5)
Genotyping by array (3)
Other (3)
Transcription profiling by SAGE (2)
Animal - High-throughput sequencing (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
Antigen profiling (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (1950)
2021 (1812)
2023 (1654)
2025 (1543)
2024 (1517)
2020 (1355)
2018 (1112)
2019 (1109)
2017 (912)
2016 (893)
2015 (697)
2014 (628)
2013 (471)
2012 (387)
2011 (358)
2010 (296)
2026 (233)
2009 (225)
2008 (151)
2007 (101)
2006 (61)
2005 (40)
2002 (26)
2004 (24)
2003 (21)
2000 (15)
1999 (15)
1998 (9)
2001 (8)
1997 (2)

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Effects of herb DG and KK01 on Type 2 Diabetes Mellitus (T2DM) through Lipidomics

Not available

ORGANISM(S): Mus musculus

ST000530 | MetabolomicsWorkbench

KK-LC-1 as a feasible therapeutic target to eliminate ALDH+ stem cells in triple negative breast cancer

Failure to achieve complete elimination of triple negative breast cancer (TNBC) stem cells after adjuvant therapy is associated with poor outcomes. Aldehyde dehydrogenase 1 (ALDH1) is a marker of breast cancer stem cells (BCSCs), and its enzymatic activity regulates tumor stemness. Identifying upstr...

ORGANISM(S): Homo sapiens (Human)

2023-04-12 | PXD040200 | Pride

Xenia sp. KK-2018

Xenia sp. KK-2018 Transcriptome or Gene expression

PRJNA498573 | ENA

Phosphoproteomics of Pseudomonass aeruginosa with KK and KKP overproduction

To determined the effects of KK and KKP on the phosphorylation levels of proteins in PAO1, we overexpressed KK and KKP separately in PAO1 cells via pHERD20T based plasmids.

ORGANISM(S): Pseudomonas aeruginosa PAO1

2024-07-20 | PXD035228 | Pride

Kk Lc-msms Pseudomonass aeruginosa Pao1 Kkp

Mus musculus strain:C57BL/6J, KK-Ay

16S rRNA sequencing of gut microbiota in KK-Ay mice

PRJDB39849 | ENA

Streptomyces sp. KK

PRJNA972493 | ENA

Mus musculus strain:KK/Ta

The influence of living alone on epigenomic and transcriptomic changes of pancreatic islets derived from an inbred strain of mice with spontaneous diabetes and moderate obesity

PRJDB15203 | ENA

Mus musculus strain:KK/Ta

The influence of living alone on epigenomic and transcriptomic changes of pancreatic islets derived from an inbred strain of mice with spontaneous diabetes and moderate obesity

PRJDB15204 | ENA

Bandra megavirus isolate:KK-1

Bandra megavirus isolate:KK-1 Genome sequencing

PRJNA429331 | ENA

Targeting KK-LC-1 inhibits malignant biological behaviors of triple-negative breast cancer.

Not available

S-EPMC9996895 | biostudies-literature

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18060 Results

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