Knudsen J J - OmicsDI

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Unknown (667)
Transcriptomics (27)
Proteomics (16)
Genomics (11)
Metabolomics (3)

Organisms

Homo sapiens (24)
Saccharomyces cerevisiae (13)
Mus musculus (10)
Salmo salar (1)
Arachis hypogaea (1)
Caenorhabditis elegans (1)

Organisms

Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (27)
pride (14)
EGA (9)
MetaboLights (3)
MassIVE (2)
ENA (2)

Tissue

Lung (4)
Blood plasma (1)
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Cell culture (1)
Embryonic stem cell (1)
Epithelial cell (1)
Heart (1)
Melanocyte (1)
Seed (1)
Skeletal muscle (1)
Skin (1)
Skin of body (1)
Stem cell (1)

Disease

Gliosarcoma (1)
Non-small cell lung cancer (1)
Brain cancer (1)
Breast cancer (1)
Cardiovascular system disease (1)
Colorectal carcinoma (1)
Idiopathic pulmonary fibrosis (1)
Lung cancer (1)
Melanoma (1)
Prostate adenocarcinoma (1)
Pulmonary fibrosis (1)
Squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (10)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Bottom-up proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (1)
Orbitrap Exploris 480 (1)
Q Exactive Plus (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Q Exactive (1)

Publication Date

2008 (6)
2011 (5)
2020 (5)
2015 (4)
2009 (4)
2024 (4)
2014 (3)
2026 (2)
2023 (2)
2016 (1)
2013 (1)
2012 (1)
2010 (1)
2007 (1)
2006 (1)
2022 (1)
2025 (1)
2021 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15428 (2)
CHEBI:15891 (2)
CHEBI:16027 (2)
CHEBI:16450 (2)
CHEBI:16668 (2)
CHEBI:16811 (2)
CHEBI:17126 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17822 (2)
CHEBI:18237 (2)
CHEBI:21557 (2)
CHEBI:24898 (2)
CHEBI:27570 (2)
CHEBI:28044 (2)
CHEBI:28300 (2)
CHEBI:28683 (2)
CHEBI:29016 (2)
CHEBI:6650 (2)
CHEBI:11851 (1)
CHEBI:132188 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:132983 (1)
CHEBI:133032 (1)
CHEBI:133057 (1)

Metabolite Name

3-methyl-2-oxobutyrate (2)
3-methyl-2-oxovalerate (2)
Glutamate (2)
Methionine (2)
(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPI* (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI* (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenosine (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)

First Public Date

2020 (1)
2014 (1)

Study type

Transcription profiling by array (24)
MicroRNA profiling by array (2)
RNA-seq of coding RNA (1)

Release Date

2025 (76)
2022 (73)
2024 (65)
2021 (65)
2023 (58)
2018 (51)
2019 (49)
2020 (42)
2015 (35)
2016 (32)
2017 (32)
2014 (20)
2011 (18)
2009 (12)
2008 (12)
2026 (12)
2013 (10)
2012 (10)
2007 (7)
2006 (6)
2010 (3)
2001 (2)
2005 (1)
2003 (1)
2000 (1)

Lab affiliation

Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (4)
Baylor College of Medicine (1)
Calico Life Sciences (1)
Department of Stem Cell Medicine, Murdoch Children's Research Institute, Victoria, Australia (1)
Department of Surgery Cedars-Sinai Medical Center (1)
Division of Clinical Protein Science & Imaging, Department of Clinical Sciences (Lund), Department of Biomedical Engineering, Lund University, Lund, Sweden (1)
Institute of Agriculture and Natural Resources, Food Science and Technology, University of Nebraska-Lincoln, NE, United States (1)
Karolinska Insitutet (1)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health & Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark (1)
University of Groningen, University Medical Center Groningen, Department of Cardiology, The Netherlands, Hanzeplein 1, 9713 GZ, Groningen, the Netherlands (1)
University of Oslo (1)

Tags

xref:PubMed:20402793 (1)

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A generalized Knudsen theory for gas transport with specular and diffuse reflections.

Not available

S-EPMC10651930 | biostudies-literature

Assessment of cerebral drug occupancy in humans using a single PET-scan: A [¹¹C]UCB-J PET study.

Not available

S-EPMC11369007 | biostudies-literature

Engineering topology and kinetics of sucrose metabolism in Saccharomyces cerevisiae for improved ethanol yield

Sucrose is a major carbon source for industrial bioethanol production by Saccharomyces cerevisiae. In yeasts, two modes of sucrose metabolism occur: (i) extracellular hydrolysis by invertase, followed by uptake and metabolism of glucose and fructose, and (ii) uptake via sucrose-H+ symport followed b...

ORGANISM(S): Saccharomyces cerevisiae

2011-09-05 | E-GEOD-30535 | biostudies-arrayexpress

Transcription profiling of yeast to investigate the involvement of Snf7 and Rim101 in regulation of TIR1 and anaerobically up-regulated genes

Despite the scientific and applied interest in anaerobic metabolism of Saccharomyces cerevisiae, not all genes whose transcription is up-regulated under anaerobic conditions have yet been linked to known transcription factors. Experiments with a reporter construct in which the promoter of the anaero...

ORGANISM(S): Saccharomyces cerevisiae

2009-10-02 | E-GEOD-18128 | biostudies-arrayexpress

Vapor pressure of nine perfluoroalkyl substances (PFASs) determined using the Knudsen Effusion Method.

Not available

S-EPMC7505237 | biostudies-literature

Transcription profiling of S. cerevisiae during prolonged maltose limited cultivation

Prolonged cultivation (>25 generations) of Saccharomyces cerevisiae in aerobic, maltose-limited chemostat cultures led to profound physiological changes. Maltose hypersensitivity was observed when cells from prolonged cultivations were suddenly exposed to excess maltose. This substrate hypersensitiv...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-16 | E-GEOD-8897 | biostudies-arrayexpress

Using ToxCast™ Data to Reconstruct Dynamic Cell State Trajectories and Estimate Toxicological Points of Departure.

Not available

S-EPMC4937847 | biostudies-literature

Enhancing Use of Medications for Opioid Use Disorder Through External Coaching.

Not available

S-EPMC10836327 | biostudies-literature

Susceptibility of microtubule-associated protein 1 light chain 3β (MAP1LC3B/LC3B) knockout mice to lung injury and fibrosis.

Not available

S-EPMC6902724 | biostudies-literature

Expression, purification, crystallization and preliminary X-ray analysis of the Met244Ala variant of catalase-peroxidase (KatG) from the haloarchaeon Haloarcula marismortui.