Koch S S - OmicsDI

Show results for

Unknown (5430)
Transcriptomics (375)
Proteomics (266)
Genomics (83)
Metabolomics (44)
Other (3)
Multiomics (2)
Models (1)
Genomic (1)

Organisms

Homo sapiens (248)
Mycobacterium tuberculosis (94)
Mus musculus (89)
Mycobacterium tuberculosis H37Rv (37)
Vibrio cholerae (33)
Tetranychus urticae (9)
Arabidopsis thaliana (8)
Rattus norvegicus (8)
Danio rerio (7)
Oryctolagus cuniculus (5)
Vibrio cholerae O1 str. C6706 (3)
Aliivibrio salmonicida LFI1238 (3)
Mycobacterium tuberculosis CDC1551 (3)
Solanum lycopersicum (3)
Vibrio cholerae O1 biovar El Tor str. N16961 (2)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (2)
Macaca fascicularis (2)
Panonychus citri (2)
Mycobacterium tuberculosis variant bovis BCG (1)
Atta vollenweideri (1)
Mycobacterium avium subsp. paratuberculosis K-10 (1)
Mycobacterium tuberculosis str. Erdman = ATCC 35801 (1)
Vibrio campbellii (1)
Colletotrichum higginsianum (1)
Macroptilium atropurpureum (1)
Mycobacterium leprae (1)
Photobacterium profundum (1)
Podospora anserina (1)
Macaca mulatta (1)
Pan troglodytes (1)

Organisms

Saccharomyces cerevisiae (4)
Mus musculus (3)
Komagataella phaffii (2)
Staphylococcus aureus (2)
Saccharomyces cerevisiae W303 (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Salmonella enterica subsp. enterica (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (409)
pride (217)
MetaboLights (44)
ENA (34)
MassIVE (22)
EGA (20)
PAXDB (8)
PeptideAtlas (7)
PanoramaPublic (4)
GPMDB (3)
jPOST (3)
BioModels (1)
dbGaP (1)
iProX (1)

Tissue

Cell culture (47)
Epithelial cell (19)
Fibroblast (13)
Brain (11)
Colon (7)
Leaf (7)
Skeletal muscle (7)
Heart (5)
Liver (5)
Permanent cell line cell (5)
Kidney (4)
Lung (4)
Macrophage (4)
Blood plasma (3)
Cell suspension culture (3)
Melanocyte (3)
Muscle (3)
Plant cell (3)
Rectum (3)
Skin (3)
T cell (3)
Venom (3)
Blood serum (2)
Breast cancer cell (2)
Colonic cancer cell (2)
Colonic cancer cell line (2)
Embryo (2)
Rectal cancer cell line (2)
Stromal cell of bone marrow (2)
B cell (1)

Disease

Colon cancer (8)
Brain glioblastoma multiforme (4)
Breast cancer (4)
Chronic myeloid leukemia (3)
Not Available (3)
Rectum cancer (3)
Alzheimer's disease (2)
Brain cancer (2)
Disease free (2)
Influenza (2)
Lung cancer (2)
Skeletal muscle atrophy (2)
Fish tuberculosis (1)
HIV-Tuberculosis with Immune Reconstitution Inflammatory Syndrome (1)
Non-diabetic (1)
Carcinoma (1)
Normal (1)
Acute leukemia (1)
Atopic dermatitis (1)
Cardiovascular system disease (1)
Carotid artery occlusion (1)
Chlamydia trachomatis infectious disease (1)
Gastrointestinal system disease (1)
Huntington Disease (1)
Increased body weight (1)
Kidney disease (1)
Lung non-squamous non-small cell carcinoma (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Neck carcinoma (1)

Technology Type

Mass Spectrometry (217)
Shotgun proteomics (111)
Gel-based experiment (48)
Mass spectrometry (39)
Bottom-up proteomics (29)
Affinity purification coupled with mass spectrometry proteomics (21)
Data-dependent acquisition (12)
SWATH MS (11)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
Illumina 15K (8)
Data-independent acquisition (8)
Mass spectrometry assay (5)
SRM/MRM (5)
All-ion fragmentation (3)
Top-down proteomics (3)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

NextSeq 500 (14)
Illumina HiSeq 2000 (10)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2500 (4)
Chemostat (3)
Bioanalyser (3)
Illumina NovaSeq X (3)
Nanodrop N1000 spectrophotometer (2)
Illumina Genome Analyzer IIx (2)
Bellco roll-in incubator (2)
Variable Atmosphere Incubator (2)
None (2)
Ion Torrent Proton (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Illumina DNA Prep sample preparation kits (Illumina Inc., San Diego, CA, USA). Final libraries concentrations and size were assessed with Quant-IT DNA Assay Kit and Agilent 4200 Tapestation System (Agilent Technologies, Milan, Italy), (1)
QIAamp DNA minikit, Qiagen, Germany (1)
Agilent TapeStation (1)
Element AVITI (1)
Qubit 2.0, Agilent 2100 (1)
Agilent® 2100 Bioanalyzer Instrument (1)
None (1)
QuantStudioTM 12K Flex system (1)
Affymetrix 428 (1)
Anaerobic workstation with airlock (1)
NanoDrop (1)
NA (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)

Publication Date

2010 (58)
2014 (56)
2013 (49)
2022 (47)
2015 (45)
2012 (45)
2021 (42)
2024 (38)
2023 (37)
2020 (37)
2026 (30)
2016 (29)
2007 (29)
2025 (28)
2011 (24)
2017 (21)
2009 (21)
2019 (20)
2018 (20)
2008 (18)
2005 (11)
2006 (8)
2004 (1)

UNIPROT ID/AC

10090.ENSMUSP00000053997 (3)
10090.ENSMUSP00000072521 (3)
10090.ENSMUSP00000076447 (3)
10090.ENSMUSP00000079944 (3)
O14744 (1)
O14980 (1)
O95149 (1)
P08621 (1)
P09012 (1)
P09234 (1)
P14678 (1)
P43487 (1)
P52292 (1)
P52297 (1)
P52298 (1)
P60510 (1)
P62304 (1)
P62306 (1)
P62308 (1)
P62314 (1)
P62316 (1)
P62318 (1)
P62826 (1)
Q09161 (1)
Q14974 (1)
Q16637 (1)
Q8IZH2 (1)
Q92973 (1)
Q96RS0 (1)
Q9H814 (1)

CHEBI ID

CHEBI:27897 (16)
CHEBI:28044 (16)
CHEBI:17596 (14)
CHEBI:16335 (13)
CHEBI:17509 (13)
CHEBI:25017 (12)
CHEBI:17015 (11)
CHEBI:26271 (11)
CHEBI:29016 (11)
CHEBI:30753 (11)
CHEBI:7916 (11)
CHEBI:16235 (10)
CHEBI:16750 (10)
CHEBI:16811 (10)
CHEBI:17533 (10)
CHEBI:17750 (10)
CHEBI:22660 (10)
CHEBI:24898 (10)
CHEBI:28300 (10)
CHEBI:30763 (10)
CHEBI:30769 (10)
CHEBI:15354 (9)
CHEBI:15741 (9)
CHEBI:16411 (9)
CHEBI:15422 (1)
CHEBI:37565 (1)
CHEBI:43474 (1)
CHEBI:58189 (1)
CHEBI:74035 (1)
CHEBI:84596 (1)

Metabolite Name

Guanosine (8)
Tryptophan (8)
Isoleucine (7)
Leucine (7)
Phenylalanine (7)
Adenosine (6)
Inosine (6)
Kynurenine (6)
Xanthine (6)
Adenine (5)
Arginine (5)
Aspartic acid (5)
Chitotriose (5)
Choline (5)
Glutamine (5)
Guanine (5)
Ornithine (5)
Proline (5)
Riboflavin (5)
Xanthosine (5)
2,3-dihydroxypropane-1-sulfonate (4)
4-aminobenzoic acid (4)
4-hydroxybenzoic acid (4)
Citric acid (4)
Citrulline (4)
Cytosine (4)
Inosine (4)
L-Tyrosine (4)
Methionine (4)
Myristic acid (4)

First Public Date

2026 (5)
2025 (4)
2020 (4)
2023 (3)
2021 (3)
2017 (3)
2024 (2)
2019 (2)
2018 (2)
2015 (2)
2013 (2)
2022 (1)
2014 (1)

Modelling Approach

Petri net (1)

Lab affiliation

David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (6)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (5)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (4)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
1. Center for Molecular Medicine Cologne, University of Cologne, Robert-Koch-Str. 21, D- 50931 Cologne, Germany 2. Inst. for Neurophysiology, University of Cologne, Robert-Koch-Str. 39, D-50931 Cologne, Germany 3. CECAD; Cologne Cluster of Excellence in Cellular Stress Responses in Ageing-associated Diseases, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931 Cologne, Germany (3)
Experimental Neurology, University Hospital, Frankfurt am Main, Germany (3)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (3)
Max-Planck-Institute for Multidisciplinary Sciences Bioanalytical Mass Spectrometry Group Am Fassberg 11 D-37077 Goettingen, Germany University Medical Center Goettingen Bioanalytics Institute for Clinical Chemistry Robert Koch Strasse 40 D-37075 Goettingen, Germany (3)
Robert Koch-Institute, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (3)
Department of Biochemistry, University of Utah (2)
Department of Biological Engineering, Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (2)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (2)
University of Nebraska - Lincoln (2)
(Head, NHS Highly Specialised Mitochondrial Diagnostic Laboratory and Professor of Mitochondrial Pathology), Wellcome Centre for Mitochondrial Research, Newcastle University, UK (1)
1. Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany 2. Bioanalytics, University Medical Center, Robert-Koch-Straße 40, 37075 Göttingen, Germany (1)
1. Bioanalytical Mass Spectrometry Group, Max-Planck Institute for Multidisciplinary Sciencies, Am Fassberg 11, 37077 Goettingen, Germany; 2. Clinical Chemistry, University Medical Center Goettingen, Robert-Koch-Str. 40, 37075 Goettingen, Germany. (1)
1Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany 2Frankfurt Cancer Institute, Frankfurt am Main, Germany 3Cardio-Pulmonary Institute, Frankfurt am Main, Germany (1)
Aging and Cardiovascular Discovery Center, Lewis Katz School of Medicine, Temple University, Philadelphia, PA 19140, USA (1)
Associate Professor Department of Clinical and Molecular Medicine Faculty of Medicine and Health Sciences +47 72824684 Laboratoriesenteret, Øya (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
BioMediTech & Tampere University Hospital, Faculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34 (ARVO), FI-33520 Tampere, Finland (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany Bioanalytics, Georg August University, Robert-Koch-Straße 40, 37073 Göttingen, Germany (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, D-37077 Göttingen, Germany Bioanalytics, Institute for Clinical Chemistry, University Medical Center Göttingen, Robert-Koch-Strasse 40, D-37075 Göttingen, Germany (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Göttingen, Germany Bioanalytics Group, Institute of Clinical Chemistry, University Medical Center Göttingen, Robert-Koch-Straße 40, 37075 Göttingen, Germany (1)
Bioanalytical Mass Spectrometry Group, Max-Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Goettingen; Institute for Clinical Chemistry, University Medical Center Goettingen, Robert-Koch-Str. 40, 37075 Goettingen (1)
Bioinformatics Unit (MF 1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)

IsPrivate

False (1)

Classification

bacteria (4)

Modification

-17.026549 (1)
10.008269 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
42.010565 (1)
45.029395 (1)
4x(15)N labeled L-arginine (1)
58.005479 (1)
6.020129 (1)

Study type

Transcription profiling by array (249)
RNA-seq of coding RNA (51)
ChIP-seq (22)
Unknown experiment type (13)
ChIP-chip by tiling array (10)
Methylation profiling by array (9)
ChIP-chip by array (7)
Other (6)
Comparative genomic hybridization by array (4)
DNA-seq (4)
Proteomic profiling by array (4)
RNA-seq of total RNA (4)
High-throughput sequencing (3)
Transcription profiling by tiling array (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Human - One-color microarray (2)
Animal - High-throughput sequencing (2)
RIP-seq (2)
One-color microarray (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Ribo-seq (1)
MicroRNA profiling by array (1)

Release Date

2021 (591)
2022 (589)
2023 (568)
2025 (525)
2024 (512)
2020 (451)
2019 (364)
2018 (284)
2015 (276)
2016 (252)
2017 (247)
2014 (229)
2013 (159)
2010 (140)
2012 (126)
2011 (110)
2009 (88)
2026 (87)
2008 (65)
2007 (54)
2005 (39)
2006 (25)
2004 (18)
2003 (11)
2002 (10)
2001 (6)
2000 (5)
1999 (4)
1998 (2)
1997 (1)

Previous page
1 / 621
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 621
Next page

Sort by:

Relevance

Page size

S. Muenchen phylogeny Germany

Clinical S. Muenchen isolates

PRJEB82672 | ENA

Clinical S. Blockley isolates from Germany.

Clinical S. Blockley isolates from Germany from 2024.

PRJEB88342 | ENA

Staphylococcus aureus isolate:Robert Koch Institute, Berlin

Staphylococcus aureus isolate:Robert Koch Institute, Berlin Genome sequencing

PRJNA737330 | ENA

Release of Ecologically Relevant Metabolites by the Cyanobacterium, Synechococcus elongatus CCMP 1631

Phytoplankton are known to release organic compounds that fuel secondary production by heterotrophic bacteria. Here we show that an abundant marine cyanobacterium, Synechococcus elongatus, contributes a variety of nitrogen-rich and sulfur-containing compounds to dissolved organic matter. A combinati...

2015-01-26 | MTBLS155 | MetaboLights

Proteome Profiling in Cerebrospinal Fluid Reveals Novel Biomarkers of Alzheimerâ€™s Disease

Neurodegenerative diseases are a growing burden and there is an urgent need for better biomarkers for diagnosis, prognosis and treatment efficacy. Structural and functional brain alterations are reflected in the protein composition of cerebrospinal fluid (CSF). Alzheimerâ€™s disease (AD) patients ha...

ORGANISM(S): Homo sapiens (Human)

2020-05-26 | PXD016278 | Pride

Alzheimerâ€™s disease/ cerebrospinal fluid/ mass spectrometry/ neurodegeneration/ proteomics

Glutathione S-Transferase Genes Involved in Response to Short-Term Heat Stress in Tetranychus urticae (Koch).

Not available

S-EPMC11047457 | biostudies-literature

Clinical S. Strathcona isolates from Germany

PRJEB85291 | ENA

The environmental stress response regulates ribosome content in cell cycle-arrested S. cerevisiae

PRJNA916693 | ENA

Murine alveolar macrophage cell line MH-S was transduced with lentivirus expressing GFP alone or GFP plus murine MFSD7C tagged with Myc and FLAG epitopes.

We used immunoprecipitation (IP) and mass spectrometry (MS) to identify proteins that interact with MFSD7C. Because an anti-MFSD7C monoclonal antibody is not available, we used MFSD7C tagged with both Myc and FLAG epitopes in a MFSD7C-expressing murine alveolar macrophage cell line MH-S (Supplementa...

ORGANISM(S): Mus musculus (Mouse)

2020-08-20 | PXD021016 | Pride

Silence as a way of niche adaptation: mecC-MRSA with variations in the accessory gene regulator (agr) functionality express kaleidoscopic phenotypes

Functionality of the accessory gene regulator (agr) quorum sensing system is an important switch promoting either acute or chronic infections, mediated by the notorious opportunistic human and veterinary pathogen Staphylococcus aureus. Spontaneous alterations of the agr system are known to frequentl...

ORGANISM(S): Staphylococcus aureus

2021-09-09 | PXD016486 | Pride

Bacteria Mecc-mrsa S. aureus

Previous page
1 / 621
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 621
Next page

Sort by:

Relevance

Page size

6204 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets