Sort   by:  
 Page size 
ProteomicsEvaluation of the MPA Portable software performance on analyzing benchmark datasets
Within the scope of a technical note we tested our MetaProteomeAnalyzer Portable software workflow on experimental data sets from samples with known composition. For generating a benchmarking data set, the bacterial strains (5BCT) Bacillus subtilis, Escherichia coli, Pseudomonas fluorescens, Microco...
ORGANISM(S): Pseudomonas fluorescens Escherichia coli Micrococcus luteus (Micrococcus lysodeikticus) Desulfovibrio vulgaris str. Hildenborough Bacillus subtilis 
2012-12-13 | PXD007681 | Pride
Bioinformatics Metaproteomics Protein identification Data visualization 
ProteomicsMetaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge
In this study, centrifugal fractionation has been applied for fractionation of two biogas sludge samples to analyze proteins extracted from (i) crude fibers, (ii) suspended microorganisms, and (iii) secreted proteins in the supernatant using a gel-based approach followed by LC-MS/MS identification.
ORGANISM(S): Zea mays (Maize) 
2015-07-21 | PXD001508 | Pride
Metabolism Microbial communities Metaproteomics Differential centrifugation Biogas plant 
ProteomicsMetaproteome of the waste water treatment plant Gerwisch/Germany
In this study the impact of protein fractionation techniques prior to LC/MS analysis was investigated on activated sludge samples derived at winter and summer condition from a full-scale wastewater treatment plant (WWTP). For reduction of the sample complexity, different fractionation techniques inc...
ORGANISM(S): Bacteria 
2015-07-28 | PXD001547 | Pride
Metaproteomics Activated sludge Metaproteomeanalyzer Wastewater treatment plant Offgel isoelectric focusing 
ProteomicsProteotyping of microbial communities reveals the correlations between the microorganisms and the process parameters
Background: Methane yield and biogas productivity of biogas plants depend on microbial community structure and functionality, substrate supply, and general process parameters. Little is known, however, about the correlations between microbial community function and the process parameters. To close t...
ORGANISM(S): Acyrthosiphon pisum (Pea aphid) 
2016-04-19 | PXD003526 | Pride
Biogas plant Biogas Anaerobic digestion Complex microbial community 
ProteomicsDetection, isolation and characterization of phage-host complexes using BONCAT and click chemistry
Phages are viruses that infect prokaryotes and can shape microbial communitiesby lysis, thus offering applications in various fields. However, challengesexist in sampling, isolation and accurate prediction of the host specificity ofphages as well as in the identification of newly replicated virions ...
ORGANISM(S): Escherichia phage Lambda 
2024-08-29 | PXD044316 | Pride
Phage Fluorescence Proteomics Boncat labeling Host range Sequencing Click chemistry Biotin Lc-ms/ms 
UnknownMetaproteomics of complex microbial communities in biogas plants.
Not available
S-EPMC4554464 | biostudies-literature
UnknownThe Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12.
Not available
S-EPMC7047895 | biostudies-literature
UnknownRedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion.
Not available
S-EPMC6373973 | biostudies-literature
UnknownMPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.
Not available
S-EPMC5757220 | biostudies-literature
UnknownProteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type.
Not available
S-EPMC4960849 | biostudies-literature
Sort   by:  
 Page size