Kok M M - OmicsDI

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biostudies-arrayexpress (78)
pride (23)
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Ordinary differential equation model (5)

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Transcription profiling by array (53)
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Lab affiliation

Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (4)
1 Precision Medicine Programme, Yong Loo Lin School of Medicine (YLLSoM), National University of Singapore, 2 NUS Centre for Cancer Research, National University of Singapore, 3 Department of Biochemistry, YLLSoM, National University of Singapore (1)
Aarhus University Department of Biomedicine Høegh-Guldbergsgade 10 DK-8000 Aarhus C (1)
Analytical Science & Technology (Protein Analytics), Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, Centros, Singapore 138668 (1)
Associate Professor in Chromosome Dynamics and Stability (Genome Damage and Stability) Chromosome Dynamics and Stability Group Genome Damage and Stability Centre University of Sussex Brighton BN1 9RQ (1)
Bioprocessing Technology Institute (1)
Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore (1)
Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (1)
Centre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, SA, Australia Adelaide Medical School, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA, Australia (1)
Clayton Foundation Laboratories for Peptide Biology The Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla, CA, USA (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, the Netherlands, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (1)
Department of Pathology, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (1)
Department of Pathology, Amsterdam UMC, Vrije UniversiteitAmsterdam, Amsterdam, The Netherlands (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Deptartment of Orthodontics, University Clinic of Dental Medicine, University of Geneva (1)
Erasmus MC (1)
Institute for Systems Biology, Seattle, WA, USA (1)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (1)
Senior Principal Scientist I,Bioprocessing Technology Institute, A*Star, Singapore Adjunct Associate Professor, Duke-NUS Medical School, Singapore Adjunct Associate Professor,Singapore Institute of Technology, Singapore (1)

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Sodium arsenite induced gene expression changes in A549 human epithelial lung carcinoma cells

Arsenic is methylated during its metabolism, thereby depleting the intracellular methyl donor S-adenosyl-methionine, which may lead to disturbances in DNA methylation patterns which could lead to altered gene expression Cells were exposed to sodium arsenite (NaAsO2, Sigma) at concentrations of 0.08 ...

ORGANISM(S): Homo sapiens

2014-09-17 | E-GEOD-44169 | biostudies-arrayexpress

Sodium arsenite induced DNA methylation changes in A549 human epithelial lung carcinoma cells

Arsenic is methylated during its metabolism, thereby depleting the intracellular methyl donor S-adenosyl-methionine, which may lead to disturbances in DNA methylation patterns Cells were exposed to sodium arsenite (NaAsO2, Sigma) at concentrations of 0.08 M-BM-5M, 0.4 M-BM-5M and 2 M-BM-5M for 1, 2 ...

ORGANISM(S): Homo sapiens

2014-09-17 | E-GEOD-44173 | biostudies-arrayexpress

Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003

Members of the genus Bifidobacterium are common inhabitants of the gastrointestinal tract of humans and other mammals, where they ferment many diet-derived carbohydrates that cannot be digested by their host. To extend our understanding of bifidobacterial carbohydrate utilisation, we investigated th...

ORGANISM(S): Bifidobacterium breve

2013-08-16 | E-GEOD-47448 | biostudies-arrayexpress

A two-component regulatory system controls serpin expression in Bifidobacterium breve UCC2003.

This work reports on the identification and molecular characterization of a two-component regulatory system (2CRS), encoded by serRK, which is believed to control the expression of the ser2003 locus in Bifidobacterium breve UCC2003. The ser2003 locus consists of two genes, Bbr_1319 (sagA) and Bbr_13...

ORGANISM(S): Bifidobacterium breve UCC2003

2012-08-28 | E-GEOD-37835 | biostudies-arrayexpress

Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003

In this study, we describe the functional characterisation of the B. breve UCC2003 gal locus, which is dedicated to the utilisation of galactan, a plant-derived polysaccharide. Using a combination of molecular approaches we conclude that the galA gene of B. breve UCC2003 encodes a beta-1,4-endogalac...

ORGANISM(S): Bifidobacterium breve UCC2003

2012-05-16 | E-GEOD-21865 | biostudies-arrayexpress

Ribose utilization by the human commensal Bifidobacterium breve UCC2003

Growth of B. breve UCC2003 on ribose leads to the transcriptional induction of the rbsACBDK gene cluster. Generation and phenotypic analysis of an rbsA insertion mutant established that the rbs gene cluster is essential for ribose utilization, and that its transcription is likely regulated by a LacI...

ORGANISM(S): Bifidobacterium breve UCC2003

2010-05-19 | E-GEOD-17325 | biostudies-arrayexpress

Genome-Wide Identification and Spatial Expression Analysis of Histone Modification Gene Families in the Rubber Dandelion Taraxacum kok-saghyz.

Not available

S-EPMC9415798 | biostudies-literature

Effect of drought stress on natural rubber biosynthesis and quality in Taraxacum kok-saghyz roots.

Not available

S-EPMC10802950 | biostudies-literature

Cellodextrin utilization by Bifidobacterium breve UCC2003

The transcription of the cldEFGC gene cluster of Bifidobacterium breve UCC2003 was shown to be induced upon growth on cellodextrins, implicating these genes in the metabolism of these sugars. Phenotypic analysis of a B. breve UCC2003::cldE insertion mutant confirmed that the cld gene cluster is excl...

ORGANISM(S): Bifidobacterium breve UCC2003

2010-08-11 | E-GEOD-17604 | biostudies-arrayexpress

Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 trigger alternative transcriptional host responses

This study analysed the temporal transcriptional response of L. lactis UC509.9 undergoing infection with either Tuc2009 or c2, representing phages of two different species (P335 and c2, respectively) of the family Siphoviridae. For the first time, to our knowledge, both DNA microarrays of the host a...

ORGANISM(S): Lactococcus lactis subsp. cremoris UC509.9

2013-06-27 | E-GEOD-45655 | biostudies-arrayexpress

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