Kong P P - OmicsDI

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Unknown (15451)
Proteomics (231)
Transcriptomics (174)
Genomics (170)
Metabolomics (48)
Genomic (8)
Other (1)

Organisms

Homo sapiens (247)
Mus musculus (108)
Arabidopsis thaliana (14)
Rattus norvegicus (11)
Gallus gallus (7)
Oryza sativa (7)
Drosophila melanogaster (4)
Globodera pallida (3)
Cucumis sativus (2)
Trypanosoma brucei brucei (2)
Schizosaccharomyces pombe (2)
Hordeum vulgare subsp. vulgare (2)
Saccharomyces cerevisiae (2)
Danio rerio (2)
Cryptomys hottentotus hottentotus (1)
Cavia porcellus (1)
Aspergillus flavus (1)
Gossypium hirsutum (1)
Quercus suber (1)
Macaca mulatta (1)
Lolium perenne (1)
synthetic construct (1)
Zea mays (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Streptococcus pneumoniae (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Solanum tuberosum (1)
Caenorhabditis elegans (1)
Plasmodium falciparum (1)
Pseudomonas aeruginosa (1)

Organisms

Homo sapiens (13)
Pseudomonas aeruginosa PAO1 (9)
Mus musculus (9)
Pseudomonas savastanoi pv. phaseolicola 1448A (7)
rat gut metagenome (2)
Pseudomonas aeruginosa (2)
Pachycereus pringlei (1)
Pseudopolydora vexillosa (1)
Pungitius vulgaris (1)
Prochlorococcus marinus str. NATL2A (1)
Pseudomonas syringae pv. syringae B728a (1)
Paraphysomonas longispina (1)
Panax notoginseng (1)
Pseudomonas savastanoi pv. phaseolicola (1)
Procambarus clarkii (1)
Pseudomonas syringae (1)
Pungitius pungitius (1)
Caenorhabditis elegans (1)
gut metagenome (1)
rhizosphere metagenome (1)
Arabidopsis thaliana (1)
Rattus norvegicus (1)
seawater metagenome (1)

Repository

pride (199)
biostudies-arrayexpress (193)
ENA (82)
EGA (69)
MetaboLights (45)
iProX (18)
MassIVE (10)
dbGaP (8)
GNPS (2)
PeptideAtlas (2)
geo (1)
GPMDB (1)
jPOST (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (24)
Blood plasma (11)
Epithelial cell (11)
Plant cell (11)
Brain (6)
Leaf (5)
Whole body (5)
Hepatocyte (4)
Kidney (4)
Lung (4)
Permanent cell line cell (4)
Root (4)
Testis (4)
Blood platelet (3)
Cell suspension culture (3)
Colon (3)
Intervertebral disc (3)
Kidney cell (3)
Pancreas (3)
Retina (3)
Stem cell (3)
T cell (3)
Male Reproductive System (2)
Blood (2)
Blood serum (2)
Bone cell (2)
Breast (2)
Embryo (2)
Embryonic stem cell (2)
Blood (1)

Disease

Disease free (6)
Breast cancer (5)
Colon cancer (4)
Wounds and Injuries (4)
Osteosarcoma (3)
COVID-19 (2)
Colitis (2)
Liver cancer (2)
Non-small cell lung carcinoma (2)
Pancreatic cancer (2)
Periodontitis (2)
Not Available (1)
Acute leukemia (1)
Age related macular degeneration (1)
Atherosclerosis (1)
Bone osteosarcoma (1)
Brain cancer (1)
Cerebrovascular disease (1)
Endometrial cancer (1)
Glaucoma (1)
Hepatocellular carcinoma (1)
IgA glomerulonephritis (1)
Infective endocarditis (1)
Influenza (1)
Lung carcinoma (1)
Macular degeneration (1)
Malignant neoplasm of ovary (1)
Myopia (1)
Neurodegenerative disease (1)
Osteogenesis imperfecta (1)

Technology Type

Mass Spectrometry (200)
Shotgun proteomics (68)
Bottom-up proteomics (57)
Data-dependent acquisition (38)
Mass spectrometry (23)
Mass spectrometry assay (21)
Data-independent acquisition (21)
SWATH MS (18)
Affinity purification coupled with mass spectrometry proteomics (17)
Gel-based experiment (15)
Top-down proteomics (12)
SRM/MRM (5)
DiaPASEF (4)
All-ion fragmentation (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000 (2)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
NMR spectroscopy (1)
ESI (1)
Affinity proteomics (1)
HDMSE (1)
Immunopeptidomics (1)
Proteogenomics (1)
RNA mass spectrometry (1)

Instrument Platform

DNBSEQ-G400 (7)
Illumina NovaSeq 6000 (5)
BGISEQ-500 (4)
Illumina HiSeq 4000 (4)
Maxwell 16 LEV-plant RNA kit (3)
DNBSEQ-T7 (3)
Orbitrap Fusion (3)
NextSeq 2000 (2)
Illumina HiSeq 2000 (2)
6540 Q-TOF LC/MS (Agilent) (2)
Q Exactive (2)
HPC cluster Lobo (1)
DNBSEQ-G400 FAST (1)
Maxwell® 16 AS2000 (1)
Illumina Truseq RNA Sample Preparation Kit (1)
Agilent Bioanalyzer (1)
Not applicable (1)
TruSeq RNA Sample Preparation Kit (Illumina) (1)
Rneasy Plant Mini Kit (Qiagen) (1)
Not provided (1)
N/A (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 2500 (1)
MicrOTOF-Q II (1)
Instrument (1)
LTQ Orbitrap (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive HF-X (1)

Publication Date

2025 (68)
2026 (63)
2024 (39)
2015 (39)
2021 (32)
2014 (27)
2022 (26)
2013 (26)
2023 (23)
2012 (23)
2011 (22)
2020 (17)
2018 (13)
2010 (13)
2016 (12)
2019 (10)
2017 (5)
2008 (5)
2009 (4)
2007 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A075B6P5 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WVZ5 (2)
A0A087WWA5 (2)
A0A087WXI0 (2)
A0A087WYL9 (2)
A0A087X130 (2)
A0A087X1S3 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0B4J1V0 (2)
A0A0C4DG89 (2)
A0AV96 (2)
A0AVF1 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15756 (9)
CHEBI:30769 (9)
CHEBI:15741 (8)
CHEBI:16335 (8)
CHEBI:6650 (8)
CHEBI:15354 (7)
CHEBI:15428 (7)
CHEBI:16015 (7)
CHEBI:16196 (7)
CHEBI:16704 (7)
CHEBI:17368 (7)
CHEBI:18012 (7)
CHEBI:28875 (7)
CHEBI:30915 (7)
CHEBI:33508 (7)
CHEBI:15891 (6)
CHEBI:15971 (6)
CHEBI:16027 (6)
CHEBI:16566 (6)
CHEBI:16755 (6)
CHEBI:16857 (6)
CHEBI:16865 (6)
CHEBI:16919 (6)
CHEBI:17191 (6)
CHEBI:17196 (6)
CHEBI:17351 (6)
CHEBI:17596 (6)
CHEBI:17687 (6)
CHEBI:17750 (6)
CHEBI:18019 (6)

Metabolite Name

Citric acid (8)
Uridine (8)
Fumaric acid (6)
Ornithine (6)
Succinic acid (6)
Xanthine (6)
Acetic acid (5)
Adenosine (5)
Creatine (5)
Dodecanoic acid (5)
Guanosine (5)
Hypoxanthine (5)
L-Histidine (5)
L-Tyrosine (5)
Linoleic acid (5)
Malonic acid (5)
Methylsuccinic acid (5)
Palmitic acid (5)
Uracil (5)
3-Hydroxybutyric acid (4)
3-Hydroxyisovaleric acid (4)
4-Hydroxybenzoic acid (4)
Adenine (4)
Adipic acid (4)
Alanine (4)
Benzoic acid (4)
Cholesterol (4)
Citramalic acid (4)
Citrulline (4)
Creatinine (4)

First Public Date

2025 (13)
2024 (11)
2014 (9)
2020 (8)
2026 (7)
2021 (7)
2019 (7)
2022 (6)
2018 (5)
2023 (4)
2017 (2)
2016 (2)
2013 (1)

Classification

bacteria (11)

Modification

4 (1)

Study type

Transcription profiling by array (113)
RNA-seq of coding RNA (31)
ChIP-seq (14)
Transcription profiling by RT-PCR (8)
Comparative genomic hybridization by array (7)
Unknown experiment type (3)
DNA-seq (3)
Other (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
High-throughput sequencing (1)
Genotyping by array (1)
Proteomic profiling by array (1)
CUT&RUN (1)

Release Date

2025 (2359)
2022 (2072)
2023 (1894)
2024 (1771)
2021 (1616)
2020 (1157)
2019 (826)
2018 (709)
2017 (586)
2016 (559)
2015 (459)
2014 (369)
2026 (349)
2013 (216)
2012 (188)
2011 (144)
2010 (125)
2009 (80)
2008 (51)
2005 (30)
2007 (29)
2006 (17)
2003 (15)
2004 (12)
2002 (3)
1999 (3)
2001 (2)
2000 (2)
1998 (1)

Lab affiliation

Faculty of Dentistry, The University of Hong Kong (3)
School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (3)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Department of Chemistry, The University of Hong Kong (2)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, 210042 Nanjing, China. (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
Lee Kong Chian School of Medicine, School of Biological Sciences, Nanyang Technological University, Singapore (2)
Penn State College of Medicine, Department of Medicine, Penn State Cancer Institute. (2)
School of Biomedical Sciences, The University of Hong Kong (2)
School of Life Sciences, The Chinese University of Hong Kong (2)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (2)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, Jiangsu,China. (2)
The Hong Kong University of Science and Technology (2)
University of Victoria (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (2)
1 Precision Medicine Programme, Yong Loo Lin School of Medicine (YLLSoM), National University of Singapore, 2 NUS Centre for Cancer Research, National University of Singapore, 3 Department of Biochemistry, YLLSoM, National University of Singapore (1)
1. Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong 2. Centre for Eye and Vision Research (CEVR), 17W Hong Kong Science Park, Hong Kong 3. Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University, Hong Kong (1)
1. Institute of Chemical Biology, Shenzhen Bay Laboratory, 518107 Shenzhen, China; 2. School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Shenzhen 518055, China (1)
1. School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China. 2. Centre for Translational Stem Cell Biology, The University of Hong Kong, Hong Kong Special Administrative Region, China. (1)
1. School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China 2. Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (1)
1.Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (1)
1Discipline of Periodontology, Faculty of Dentistry, The University of Hong Kong (1)
1Singapore Institute for Clinical Sciences, Agency for Science, Technology and Research (A*STAR), Singapore 2 Lee Kong Chian School of Medicine, Nanyang Technological University (NTU), Singapore 3 Cardiovascular and Metabolic Disorders Program, Duke-NUS Medical School, Singapore 4Yong Loo Lin School of Medicine, National University of Singapore (NUS), Singapore 5 Department of Endocrinology, Tan Tock Seng Hospital (TTSH), Singapore (1)
Academy Professor, Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Anhui Medical University (1)
Assistant Professor, School of Biomedical Sciences, Faculty of Medicine, The University of Hong Kong, HK SAR (1)

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Proteomic study of evolved P. aeruginosa strains grown in S. aureus- and K. pneumoniae-conditioned media

In this research, Pseudomonas aeruginosa underwent evolution in the supernatant of either S. aureus (SA) or K. pneumoniae (KP). Through this evolution process, we enriched a sufficient number of bacterial cells along with their corresponding proteins. Following 15 cultivation cycles, notable changes...

ORGANISM(S): Pseudomonas aeruginosa PAO1

2025-05-21 | PXD059669 | Pride

Constructing N-Containing Poly(p-Phenylene) (PPP) Films Through A Cathodic-Dehalogenation Polymerization Method.

Not available

S-EPMC11579557 | biostudies-literature

Growing large single crystals of two- or three-dimensional covalent organic polymers through unconventional Te-O-P linkages.

Not available

S-EPMC11579501 | biostudies-literature

High resolution mass spectrometry analysis of P-fructose-labeled Tom22 peptides

After identifying Tom22 as a direct target of fructose, we sought to map the potential sites that fructose binds to Tom22. We analyzed trypsin-digested peptides of P-fructose-labeled recombinant Tom22 by high-resolution mass spectrometry.

ORGANISM(S): Homo sapiens (Human)

2026-06-05 | PXD047275 | Pride

Small molecule-protein interaction Tom22 Fructose

Occurrence and Fate of Substituted p-Phenylenediamine-Derived Quinones in Hong Kong Wastewater Treatment Plants.

Not available

S-EPMC10586368 | biostudies-literature

A Water-Soluble Aggregation-Induced Emission Photosensitizer with Intrinsic Antibacterial Activity as an Antiplanktonic and Antibiofilm Therapeutic Agent

Photosensitizers (PS)s with aggregation-induced emission (AIE) properties have gained popularity in treating bacterial infections. However, most AIE PSs have poor water solubility and low selectivity, which greatly limit their applications in biological systems. Herein, we report a water-soluble and...

ORGANISM(S): Staphylococcus aureus

2025-05-07 | PXD060538 | Pride

Lc-ms Biofilm Staphylococcus aureus

Myopia Management in Hong Kong.

Not available

S-EPMC11818885 | biostudies-literature

Injury epidemiology of Ultimate Frisbee in Hong Kong.

Not available

S-EPMC8377482 | biostudies-literature

Obesity, clinical, and genetic predictors for glycemic progression in Chinese patients with type 2 diabetes: A cohort study using the Hong Kong Diabetes Register and Hong Kong Diabetes Biobank.

Not available

S-EPMC7386560 | biostudies-literature

Hemin- and temperature-dependent proteome alteration of Porphyromonas gingivalis

This study investigated the alteration of P. gingivalis proteome under the combinative conditions of hemin and temperature, revealing perturbation of proteins.

ORGANISM(S): Porphyromonas gingivalis ATCC 33277 Bacteria

2026-02-21 | PXD057081 | Pride

Porphyromonas gingivalis Hemin Temperature Dda

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16083 Results

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