Koyama K K - OmicsDI

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Unknown (928)
Transcriptomics (10)
Metabolomics (10)
Proteomics (10)

Organisms

Homo sapiens (10)
Mus musculus (6)
Arabidopsis thaliana (4)
Thermus thermophilus HB8 (1)
Vitis vinifera (1)
Bos taurus (1)
Drosophila melanogaster (1)
Gallus gallus (1)
Oryctolagus cuniculus algirus (1)
Ovis aries (1)
Rattus norvegicus (1)
Sus scrofa domesticus (1)

Repository

biostudies-arrayexpress (11)
MetaboLights (9)
jPOST (5)
pride (5)
GNPS (1)

Tissue

Brain (2)
Cell culture (1)
Microglial cell (1)
Preadipocyte (1)
Stem cell (1)

Disease

Gliosarcoma (1)
Adenocarcinoma (1)
Brain cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass spectrometry (8)
Mass Spectrometry (5)
Bottom-up proteomics (2)
Shotgun proteomics (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (7)
2014 (4)
2024 (4)
2026 (3)
2021 (2)
2015 (2)
2006 (2)
2016 (2)
2011 (1)
2010 (1)
2009 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15603 (2)
CHEBI:16235 (2)
CHEBI:16856 (2)
CHEBI:17191 (2)
CHEBI:173703 (2)
CHEBI:17750 (2)
CHEBI:17895 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:125449 (1)
CHEBI:131342 (1)
CHEBI:132188 (1)
CHEBI:1427 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Guanine (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Methylnicotinamide (1)
1-Methyluric acid (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (2)
Cell line - High-throughput sequencing (1)

Release Date

2022 (121)
2023 (108)
2025 (100)
2024 (100)
2021 (97)
2020 (63)
2018 (54)
2019 (53)
2017 (45)
2015 (37)
2016 (35)
2026 (22)
2014 (21)
2012 (13)
2013 (10)
2011 (9)
2010 (8)
2008 (8)
2009 (6)
2006 (6)
2007 (5)
2005 (5)
1999 (4)
2001 (3)
2003 (2)
1998 (2)
2004 (1)
1997 (1)

Lab affiliation

Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
Department of Biology University of Copenhagen Denmark (1)
Department of Biology, University of Copenhagen, 2100 Copenhagen O, Denmark (1)
Medical Proteomics Laboratory, The Institute of Medical Science, The University of Tokyo, Japan (1)
UNIL | University of Lausanne Faculty of Biology and Medicine Department of Biomedical Sciences Rue du Bugnon 7 CH-1005 Lausanne (1)

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Using the Montgomery-Koyama-Smith equation to calculate the stomatal area per unit lamina area for 12 Magnoliaceae species.

Not available

S-EPMC11688533 | biostudies-literature

Transcription profiling of Arabidopsis roots from wild type and stop1 mutant plants treated with Al or low pH

Comparison of stop1 mutant vs. wild type treated with Al or low pH, and gene expression responses to rhizotoxic ions (Al, low pH) in Arabidopsis roots.

ORGANISM(S): Arabidopsis thaliana

2009-05-04 | E-MEXP-1908 | biostudies-arrayexpress

A supramolecular system mimicking the infection process of an enveloped virus through membrane fusion.

Not available

S-EPMC10651892 | biostudies-literature

Cloning, overexpression, and mutagenesis of the Sporobolomyces salmonicolor AKU4429 gene encoding a new aldehyde reductase, which catalyzes the stereoselective reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (S)-4-chloro-3-hydroxybutanoate.

Not available

S-EPMC91706 | biostudies-literature

Light-induced propulsion of a giant liposome driven by peptide nanofibre growth.

Not available

S-EPMC5908854 | biostudies-literature

Evidence of horizontal transfer of the EcoO109I restriction-modification gene to Escherichia coli chromosomal DNA.