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UnknowniTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections.
Not available
S-EPMC3608280 | biostudies-literature
ProteomicsLabel-based comparative proteomics to understand progression of precancerous lesions to oral squamous cell carcinoma
Oral squamous cell carcinomas typically arise from precancerous lesions such as leukoplakia and erythroplakia. These lesions exhibit a range of histological changes from hyperplasia to dysplasia and carcinoma in situ, during their transformation to malignancy. The molecular mechanisms driving this m...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD054190 | Pride
Erythroplakia Oral squamous cell carcinoma Label-based proteomics Leukoplakia 
ProteomicsAn Integrated Quantitative Proteomics Workflow for Biomarker Discovery and Validation in Plasma
Blood plasma is one of the most widely used samples for biomarker discovery research as well as clinical investigations for diagnostic and therapeutic purposes. However, the plasma proteome is extremely complex due to its wide dynamic range of protein concentrations and the presence of high-abundanc...
ORGANISM(S): Homo sapiens (Human) 
2020-09-07 | PXD017834 | Pride
Targeted proteomics Label-based quantitation Label-free quantitation 
ProteomicsIntensity-based label-free proteomics using a quadrupole orbitrap mass spectrometer
We present a unique data set for benchmarking label free quantitative proteomics using a quadrupole orbitrap mass spectrometer. Soluble Escherichia coli digest was spiked into a HeLa digest in four different concentrations, simulating protein expression differences. The data set, which is available ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2015-03-25 | PXD001385 | Pride
Q exactive Quadrupole orbitrap Proteomics Label-free 
OtherMS1-Based Label-Free Proteomics Using a Quadrupole Orbitrap Mass Spectrometer.
Data from ProteomeXchange, PXD ID: PXD001385. File: QEP1_SpikeIn_230914_3_3ng_270914.mzml. Published as part of J Proteome Res. 2015 Mar 24 . From the Abstract: {{i}} Presented is a data set for benchmarking MS1-based label-free quantitative proteomics using a quadrupole orbitrap mass spectrometer....
ORGANISM(S): Homo_sapiens_viruses, Human_female, Escherichia_coli_k_12_substr__mg1655 
GPM32320014338 | GPMDB
Resource Reanalysis 
UnknownImputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning.
Not available
S-EPMC11208500 | biostudies-literature
ProteomicsLabel-free quantitative proteomics versus antibody-based assays to measure neutrophil derived enzymes in saliva
Discovery-based quantitative proteomics identified dozens of novel protein candidates in saliva, yet none are clinically qualified. Mass spectrometry (MS) has been recognized as newer 'gold standard' for the identification and analysis of individual proteins in complex biological samples due to high...
ORGANISM(S): Homo sapiens (Human) 
2019-12-20 | PXD015220 | Pride
Saliva Huamn experimental gingivitis 
ProteomicsCombining label-free and label-based accurate quantifications with SWATH-MS: comparison with SRM and PRM for the evaluation of bovine muscle type effects
The performances of label-based SWATH-MS, SRM and PRM to accurately quantify ten candidate biomarkers of beef meat tenderness or marbling, in a cohort of 64 bovine muscle tissues expected to cover a wide biological range of these traits, were evaluated. Limits of quantification, dynamic range and qu...
ORGANISM(S): Bos taurus (Bovine) 
2021-06-09 | PXD020638 | Pride
Beef meat quality  data-independent acquisition (dia)  quantitative ms  swath-ms  targeted proteomics 
UnknownLabel-free visual proteomics: Coupling MS- and EM-based approaches in structural biology.
Not available
S-EPMC8842845 | biostudies-literature
UnknownProtocol to characterize basement membranes during kidney development using mass spectrometry-based label-free quantitative proteomics.
Not available
S-EPMC10722381 | biostudies-literature
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