Larsen S S - OmicsDI

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Unknown (2313)
Proteomics (162)
Transcriptomics (72)
Genomics (11)
Metabolomics (10)
Other (1)

Organisms

Homo sapiens (111)
Mus musculus (48)
Bifidobacterium breve UCC2003 (13)
Rattus norvegicus (8)
Saccharomyces cerevisiae (6)
Bos taurus (4)
Xenopus laevis (4)
Lotus japonicus (3)
Arabidopsis thaliana (3)
Drosophila melanogaster (3)
Sus scrofa domesticus (3)
Staphylococcus aureus (2)
Escherichia coli (2)
Salmo trutta (1)
Bifidobacterium breve (1)
Saccharomyces paradoxus (1)
Populus tremuloides (1)
Selaginella moellendorffii (1)
Zea mays (1)
Streptococcus pneumoniae (1)
Sus scrofa (1)
Acyrthosiphon pisum (1)
Agkistrodon (1)
Arachis hypogaea (1)
Corylus avellana (1)
Crotalus atrox (1)
Crotalus cerberus (1)
Crotalus viridis (1)
Equus asinus (1)
Listeria monocytogenes (1)

Organisms

Bifidobacterium breve UCC2003 (1)

Repository

pride (141)
biostudies-arrayexpress (74)
MassIVE (19)
MetaboLights (9)
EGA (7)
PanoramaPublic (2)
ENA (2)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (32)
Permanent cell line cell (15)
Brain (14)
Epithelial cell (13)
Liver (8)
Blood plasma (5)
Egg (4)
Kidney (4)
Primary cell (4)
Skin (4)
Lung (3)
Skeletal muscle (3)
Stem cell (3)
Bone cell (2)
Embryonic stem cell (2)
Endothelial cell (2)
HEK-293 cell (2)
Heart (2)
Islet of Langerhans (2)
Macrophage (2)
Plant cell (2)
Skeletal muscle fiber (2)
Abdominal aorta (1)
Adult endothelial progenitor cell (1)
Bladder (1)
Bladder organ (1)
Blood (1)
Blood cancer cell (1)
Blood serum (1)
HeLa cell (1)

Disease

Breast cancer (7)
Type 2 diabetes mellitus (6)
Alzheimer's disease (5)
Colon cancer (3)
Disease free (3)
Melanoma (3)
Brain glioblastoma multiforme (2)
Cervix carcinoma (2)
Osteosarcoma (2)
Not Available (1)
Abdominal aorta artery (1)
Acute myeloid leukemia (1)
Barth syndrome (1)
Brain cancer (1)
Cancer (1)
Cardiovascular system disease (1)
Diffuse midline glioma (1)
Fatty liver disease (1)
Food allergy (1)
Joint inflammation (1)
Limb ischemia (1)
Liver inflammation (1)
Malignant neoplasm of ovary (1)
Meningitis (1)
Neurological dysfunction (1)
Non-small cell lung carcinoma (1)
Pancreatic cancer (1)
Plasmodium falciparum malaria (1)
Polycystic liver disease (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (141)
Shotgun proteomics (75)
Bottom-up proteomics (34)
Affinity purification coupled with mass spectrometry proteomics (25)
Data-dependent acquisition (20)
Data-independent acquisition (9)
SWATH MS (9)
Mass spectrometry (5)
Gel-based experiment (5)
NMR spectroscopy (3)
MSE (3)
All-ion fragmentation (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
DiaPASEF (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Q Exactive (5)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 4000 (2)
TripleTOF 5600 (2)
Bruker (2)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Cell culture (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
NextSeq 500 (1)
Orbitrap Fusion (1)
Instrument (1)
ISQ LT (Thermo) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Nuclear Magnetic Resonance (NMR) (1)
TripleTOF 5600 (AB Sciex) (1)
Orbitrap (1)
Qtof Premier (1)

Publication Date

2026 (24)
2013 (20)
2023 (18)
2022 (18)
2021 (17)
2019 (17)
2025 (14)
2024 (14)
2015 (14)
2020 (14)
2010 (13)
2018 (12)
2017 (9)
2014 (8)
2016 (7)
2012 (7)
2011 (7)
2008 (6)
2009 (2)
2005 (1)

CHEBI ID

CHEBI:16449 (4)
CHEBI:16811 (4)
CHEBI:18237 (4)
CHEBI:27266 (4)
CHEBI:15366 (3)
CHEBI:16737 (3)
CHEBI:18186 (3)
CHEBI:24898 (3)
CHEBI:26271 (3)
CHEBI:26986 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:30769 (3)
CHEBI:78320 (3)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:15929 (2)
CHEBI:16077 (2)
CHEBI:16411 (2)
CHEBI:16551 (2)
CHEBI:16704 (2)
CHEBI:16750 (2)
CHEBI:16919 (2)
CHEBI:16997 (2)
CHEBI:17126 (2)
CHEBI:17170 (2)
CHEBI:17306 (2)
CHEBI:17750 (2)

Metabolite Name

Valine (4)
Alanine (3)
Glutamine (3)
Isoleucine (3)
Methionine (3)
3-Hydroxybutyrate (2)
Acetate (2)
Arginine (2)
Asparagine (2)
Betaine (2)
Carnitine (2)
Choline (2)
Citrate (2)
Creatine (2)
Creatinine (2)
Dimethylamine (2)
Formate (2)
Fumarate (2)
Glutamate (2)
Glycerol (2)
Glycine (2)
Lactate (2)
Lysine (2)
Mannose (2)
Methanol (2)
Phenylalanine (2)
Proline (2)
Propylene glycol (2)
Serine (2)
Succinate (2)

First Public Date

2019 (2)

Modification

Not available (1)

Study type

Transcription profiling by array (53)
RNA-seq of coding RNA (13)
Comparative genomic hybridization by array (3)
ChIP-seq (2)
Transcription profiling by SAGE (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (266)
2022 (256)
2021 (234)
2023 (221)
2024 (201)
2020 (182)
2019 (136)
2017 (131)
2018 (129)
2016 (118)
2015 (111)
2014 (82)
2013 (67)
2012 (52)
2010 (48)
2011 (41)
2026 (37)
2008 (19)
2007 (14)
2009 (13)
2006 (8)
2003 (6)
2002 (5)
2004 (4)
2000 (2)
2005 (1)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (9)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (5)
University of Southern Denmark (3)
Copenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark (2)
Department of Dermatology, Medical University of Vienna (2)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
Head of Department Department of Molecular Mechanisms of Disease University of Zurich Winterthurerstr. 190 8057 Zurich, Switzerland (2)
University of Toronto (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
1. Cancer Signalling Research Group, School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, Callaghan, NSW, AUSTRALIA 2. Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, AUSTRALIA 3. Paediatric Program, Mark Hughes Foundation Centre for Brain Cancer Research, College of Health, Medicine, and Wellbeing, Callaghan, NSW, AUSTRALIA (1)
ARUK Senior Research Fellow & Departmental Research Lecturer Department of Physiology, Anatomy and Genetics, Kavli Institute for Nanoscience Discovery, University of Oxford, UK (1)
Aalborg University (1)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Antiviral Immunomics, Bioengineering, Technical University of Denmark, Denmark (1)
Arkana Laboratories, Little Rock, AR (1)
Arkana Laboratories, Little Rock, Arkansas, USA (1)
Biomedical Research in Melanoma-Animal Models and Cancer Laboratory Vall d'Hebron Research Institute (VHIR), Vall d'Hebron Hospital Barcelona-UAB Barcelona, 08035, Spain. (1)
Cell Cycle Group Cancer Epigenetics and Biology Program (PEBC) Bellvitge Isntitute of Biomedical Research (IDIBELL) Hospital Duran i Reynals Avinguda de la Gran Via de l'Hospitalet, 199-203 08908 - L'Hospitalet de Llobregat (1)
Cell Signaling Technolgy (1)
Centre de Recherche sur le Cancer de l‘Université Laval,Oncology, Centre de Recherche du CHU de Québec-Université Laval, Canada, G1R 3S3 (1)
Centre de Recherche sur le Cancer, PROTEO et Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Université Laval, Division Oncologie, Centre de Recherche du Centre Hospitalier Universitaire (CHU) de Québec, Québec, Canada (1)
Centre de Recherches en Cancérologie de Toulouse; INSERM U1037, team 17 PI3K isoforms, signalling and cancerogenesis (1)
Centre for Heamato-Oncology / Barts Cancer Institute (1)
Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Pathology, Berlin, Germany. (1)
Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD) and Institute for Mitochondrial Diseases and Aging, Medical Faculty, University of Cologne, Cologne, Germany. (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen, Denmark (1)
Department of Biochemistry and Molecular Biology University of Southern Denmark (1)
Department of Biochemistry and Molecular Biology University of Southern Denmark, Odense, Denmark (1)
Department of Biochemistry and Molecular Biology, Section for Biomedical Mass Spectrometry and Systems Biology, University of Southern Denmark (1)

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Enrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation - SDC-ACE

S-palmitoylation is a poorly understood post-translational modification that is gaining more attention as an essential regulator of cellular processes. The reversible nature of S-palmitoylation allows for fine-tuned control of cellular events and adaptation to stimuli. The enrichment of S-palmitoyla...

ORGANISM(S): Mus musculus (Mouse) Acyrthosiphon pisum (Pea aphid)

2026-02-16 | PXD054682 | Pride

Adaptation of CysPAT technique to characterize endogenous S-nitrosylation in RAW264.7 cells

The aim of the study was to adapt the CysPAT technique to efficiently identify and characterize endogenous S-nitrosylation in cells under physiological conditions of an experiment from a small amount of sample. Using a macrophage cell line RAW 264.7 we compared the efficacy of the method in the iden...

ORGANISM(S): Mus musculus (Mouse)

2022-02-22 | PXD008182 | Pride

Post-translational modifications (ptms) Immune system S-nitrosylation Proteomics Macrophages

Mating response of three yeast species (S. cerevisiae, S. paradoxus and S. mikatae)

We examined the mating response of three yeast species, by subjecting a-type cells from each of them to alpha-factor (6uM). The expression of cells before and after (60min) addition of alpha-factor were compared using S. cerevisiae cDNA microarrays. In addition, we verified our results with a true m...

ORGANISM(S): Saccharomyces paradoxus

2010-06-11 | E-GEOD-7525 | biostudies-arrayexpress

Larsen Syndrome and Associated Spinal Deformities.

Not available

S-EPMC10411917 | biostudies-literature

Transcription profiling of S. aureus (MRSA) clones with the same USA300 PFGE profile

Data is also available from http://bugs.sgul.ac.uk/E-BUGS-77

ORGANISM(S): Staphylococcus aureus

2009-10-12 | E-BUGS-77 | biostudies-arrayexpress

Elucidation of the inflammatory and neuroprotective molecular network of TNFalpha in neurons related to Alzheimer´s disease

Neuroinflammation is a hallmark of various neurological diseases such as Alzheimer’s disease. The aim of the study was to elucidate the dose-dependent in vitro molecular mechanism of TNFα in neurons related to neuroprotection and -degeneration. We performed a quantitative proteomics and phospho-prot...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2017-08-08 | PXD005675 | Pride

Neuroinflammation Creb Phosphoproteomics Alzheimer´s disease Mtor Tnfα

Mutations responsible for Larsen syndrome cluster in the FLNB protein.

Not available

S-EPMC2564529 | biostudies-literature

Crystal structure studies of RNA duplexes containing s(2)U:A and s(2)U:U base pairs.

Not available

S-EPMC4183603 | biostudies-literature

Glepaglutide, a novel glucagon-like peptide-2 agonist, has anti-inflammatory and mucosal regenerative effects in an experimental model of inflammatory bowel disease in rats.

Not available

S-EPMC10029296 | biostudies-literature

A molecular and clinical study of Larsen syndrome caused by mutations in FLNB.

Not available

S-EPMC2598053 | biostudies-literature

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2569 Results

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