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Unknown (2962)
Transcriptomics (294)
Models (291)
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Organisms

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Repository

biostudies-arrayexpress (321)
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Tissue

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Disease

Alzheimer's disease (7)
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Technology Type

Mass Spectrometry (80)
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Instrument Platform

Illumina NovaSeq 6000 (26)
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Performed by Novogene; Illumina library preparation instrumentation (provider standard) (1)
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- (1)
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Publication Date

2024 (130)
2015 (120)
2005 (85)
2010 (36)
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2016 (26)
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2011 (21)
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2007 (7)
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2003 (2)

UNIPROT ID/AC

P24864 (11)
P24941 (8)
Q02750 (7)
P04049 (5)
P06400 (5)
P25445 (5)
P55957 (5)
Q01094 (5)
Q13158 (5)
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O15519 (4)
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P00950 (4)
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P27824 (4)

ENSEMBL ID

ENSG00000064012 (4)

CHEBI ID

CHEBI:15422 (81)
CHEBI:16761 (79)
CHEBI:16027 (79)
CHEBI:15428 (78)
CHEBI:15996 (75)
CHEBI:17552 (75)
CHEBI:15346 (74)
CHEBI:15351 (74)
CHEBI:15846 (74)
CHEBI:16474 (74)
CHEBI:16908 (74)
CHEBI:16526 (73)
CHEBI:18367 (73)
CHEBI:15414 (72)
CHEBI:15637 (72)
CHEBI:15641 (72)
CHEBI:16240 (72)
CHEBI:18021 (72)
CHEBI:15633 (71)
CHEBI:16001 (71)
CHEBI:16108 (71)
CHEBI:16236 (71)
CHEBI:16842 (71)
CHEBI:17622 (71)
CHEBI:18406 (71)
CHEBI:15380 (70)
CHEBI:15946 (70)
CHEBI:16680 (70)
CHEBI:16856 (70)
CHEBI:16905 (70)

Metabolite Name

L-Glutamine (4)
L-Phenylalanine (4)
Arachidonic acid (3)
Glycine (3)
L-Isoleucine (3)
L-Tyrosine (3)
L-leucine (3)
Linoleic acid (3)
Palmitic acid (3)
Raffinose (3)
Stearic acid (3)
Sucrose (3)
Tryptophan (3)
Xanthine (3)
(R)-pantothenic acid (2)
(S)-lactic acid (2)
2-oxoglutaric acid (2)
3-phospho-D-glyceric acid (2)
5-Methyluridine (2)
5-oxo-L-proline (2)
Adenine (2)
Adenosine (2)
Arginine (2)
Ascorbic acid (2)
Asparagine (2)
Azelaic acid (2)
Campesterol (2)
Citric acid (2)
Creatinine (2)
D-Fructose (2)

First Public Date

2025 (6)
2016 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (179)
Constraint-based model (29)
Logical model (2)

Study status

Completed (1)

Lab affiliation

German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
Institute of Biochemistry, University of Kiel (2)
1. German Cancer Consortium (DKTK) partner site Freiburg, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany 2. Department of Urology, Medical Center-University of Freiburg, 79106 Freiburg, Germany (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo and Instituto de Investigaciones Biológicas Clemente Estable (1)
Biomolecular Mass Spectrometry and Proteomics, Utrecht University, Utrecht, The Netherlands (1)
Boston Children's Hospital | Harvard Medical School (1)
CIC bioGUNE Proteomics Service Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
Cannon Research Center, Mass Spectrometry Core Facility, Carolinas HealthCare System, United States. (1)
Center for Neuroscience and Cell Biology of theUniversity of Coimbra (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum (1)
DKFZ, Germany (1)
Departament of Molecular Biologi and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain (1)
Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, Alberta, Canada (1)
Department of Biochemistry, University of Cambridge (1)
Department of Chemistry, Michigan State University (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, USA (1)
Department of Chemistry, the University of Hong Kong (1)
Department of Genetics, Cell Bioliogy, & Anatomy Buckley Lab University of Nebraska Medical Center Omaha, Nebraska United States of America (1)
Department of Immunology and Microbiology Institute of Biomedicine Sahlgrenska Academy University of Gothenburg (1)
Department of Infectious Diseases and Immunology, Emerging Pathogens Institute, University of Florida, United States of America (1)
Department of Large Animal Diseases and Clinic, Institute of Veterinary Medicine, Warsaw University of Life Sciences, Warsaw, Poland (1)
Department of Medical Biology, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway (1)
Department of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Spain. (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea. (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology, and College of Medicine or College of Pharmacy, Seoul National University, Seoul, Korea (1)
Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Lindwurmstr. 4 80337 Munich, Germany (1)

IsPrivate

False (291)

Model Flag

Non Kinetic (114)
Non Miriam (4)
Sbml Extended (1)

Submitter Keywords

Oncology (1)

Modification

4x(2)H labeled dimethylated L-lysine (2)

Study type

Transcription profiling by array (163)
RNA-seq of coding RNA (49)
RNA-seq of coding RNA from single cells (19)
ChIP-seq (15)
Comparative genomic hybridization by array (10)
Unknown experiment type (7)
RNA-seq of non coding RNA (6)
Human - High-throughput sequencing (5)
Proteomic profiling by array (5)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by array (4)
Genotyping by array (4)
MicroRNA profiling by array (4)
Methylation profiling by array (4)
Cell line - High-throughput sequencing (3)
DNA-seq (3)
Bisulfite-seq (2)
ATAC-seq (2)
Hi-C (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Human - Single-cell sequencing (1)
High-throughput sequencing (1)
Trajectory (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Interventional (1)

Release Date

2025 (422)
2022 (408)
2023 (382)
2024 (365)
2021 (333)
2020 (235)
2019 (181)
2017 (165)
2018 (156)
2016 (117)
2015 (99)
2014 (80)
2026 (64)
2010 (59)
2013 (58)
2012 (45)
2011 (38)
2009 (31)
2008 (18)
2007 (9)
2006 (8)
2005 (5)
2003 (2)
2004 (1)
2002 (1)
2000 (1)

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A general non-self response as part of plant immunity

Plants, like other multicellular lifeforms, are colonized by microorganisms. How plants respond to their microbiota is currently not well understood. We used a phylogenetically diverse set of 39 endogenous bacterial strains from Arabidopsis thaliana leaves to assess host transcriptional and metaboli...

2021-09-13 | MTBLS2522 | MetaboLights

A Novel Approach to Characterize the Lipidome of Marine Archaeon Nitrosopumilus maritimus by Ion Mobility Mass Spectrometry

Archaea are differentiated from the other two domains of life by their biomolecular characteristics. One such characteristic is the unique structure and composition of their lipids. Characterization of the whole set of lipids in a biological system (the lipidome) remains technologically challengi...

2021-12-16 | MTBLS3714 | MetaboLights

Lipid metabolites as potential diagnostic and prognostic biomarkers for acute community acquired pneumonia

Early diagnosis of acute community-acquired pneumonia (CAP) is important in patient triage and treatment decisions. To identify biomarkers that distinguish patients with CAP from non-CAP controls, we conducted an untargeted global metabolome analysis for plasma samples from142 patients with CAP (CAP...

2016-08-11 | MTBLS354 | MetaboLights

Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type-2 diabetes

In this study we explored a unique cohort of 43 samples to build a map of metabolites varying in T2D across five different tissues (subcutaneous adipose tissue, liver, pancreatic islets, skeletal muscle and blood serum). The samples originate from the Excellence in Diabetes biobank (EXODIAB) in Swed...

2018-10-08 | MTBLS690 | MetaboLights

Heritable human genome editing and the politics of law: the South African case study.

Not available

S-EPMC12722161 | biostudies-literature

Expanding the clinical use of DBS: through a metabolomic and a lipidomic evaluation

Personalized medicine aims to tailor healthcare to individual characteristics, relying on precise biological data and patient monitoring. Metabolomics and lipidomics play a key role in this approach, providing real-time insights into metabolic states and enabling accurate diagnosis and treatment ...

2026-02-25 | MTBLS13382 | MetaboLights

Jenner2019 - Oncolytic virotherapy for tumours following a Gompertz growth law

This is a mathematical model using a Gompertz growth law to describe the in vivo dynamics of a cancer under treatment with an oncolytic virus.

2024-09-02 | BIOMD0000000850 | BioModels

Oncology