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UnknownSelection of monoclonal antibodies against 6-oxo-M(1)dG and their use in an LC-MS/MS assay for the presence of 6-oxo-M(1)dG in vivo.
Not available
S-EPMC3285145 | biostudies-literature
TranscriptomicsMetagenomic, metatranscriptomic and metaproteomic study of enrichment culture of M. oxyfera (denitrifying methanotroph)
DNA, RNA and protein were extracted from the culture and subjected to massive parallel sequencing and nano-LC-MS-MS respectively Combination of these methods enabled the reconstruction of the complete genome sequence of M oxyfera from the metagenome and identification of the functionally relevant en...
ORGANISM(S): Candidatus Methylomirabilis oxyfera 
2010-03-25 | E-GEOD-18535 | biostudies-arrayexpress
UnknownQuantification of sphingosine 1-phosphate by validated LC-MS/MS method revealing strong correlation with apolipoprotein M in plasma but not in serum due to platelet activation during blood coagulation.
Not available
S-EPMC4635185 | biostudies-literature
TranscriptomicsGene-metabolite network analysis revealed tissue specific accumulation of therapeutic metabolites in Mallotus japonicus
In this study, we performed LC-QTOF-MS-based metabolomics and RNA-seq based transcriptome analysis using seven tissues of M. japonicus.
ORGANISM(S): Mallotus japonicus 
2021-08-31 | GSE179338 | GEO
TranscriptomicsTranscription profiling by array of adenylylation of mycobacterial Glnk (PII) protein induced by nitrogen limitation
PII proteins are pivotal regulators of nitrogen metabolism in most prokaryotes, controlling the activities of many targets, including nitrogen assimilation enzymes, two component regulatory systems and ammonium transport proteins. Escherichia coli contains two PII-like proteins, PII (product of glnB...
ORGANISM(S): Mycobacterium tuberculosis 
2013-05-10 | E-BUGS-135 | biostudies-arrayexpress
ProteomicsTargeted LC-MS/MS with non-annotated m/z-features in MetE CRISPRi strain
A FI-MS screen identified accumulating m/z-features in E. coli metE CRISPRi strain which cannot be annotated as iML1515 metabolites. These m/z-features were measured via targeted LC-MS/MS and strcuture elucidation was performed via SIRIUS.
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2025-08-04 | MSV000098714 | MassIVE
UnknownMapping m6A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS.
Not available
S-EPMC10801558 | biostudies-literature
UnknownQuantitative analysis of m6A RNA modification by LC-MS.
Not available
S-EPMC8353476 | biostudies-literature
ProteomicsMouse tumor cell SCC7/SCC7-M LC-MS
To identify the downstream targets of macrophages that mediate tumor metastasis, we first established a highly metastatic cell line, named SCC7-M, then we performed proteomics analysis using the tumor tissue from mice bearing SCC7 and SCC7-M tumors.
ORGANISM(S): Mus musculus (Mouse) 
2024-05-24 | PXD048866 | Pride
Tumor cell Mouse Lc-ms Scc7 Scc7-m 
TranscriptomicsThe prominent transcriptional and metabolites changes of Mycobacterium bovis BCG str. Tokyo 172 induced by vitamin B1
Vitamin B1 (VB1) is a key dietary nutrient and crucial cofactor, which exhibits a series of regulatory functions on cellular processes and the activation of the immune system. To date, the precise effect of VB1 on Mycobacterium tuberculosis has not been fully described. In the present study, the dir...
ORGANISM(S): Mycobacterium tuberculosis variant bovis 
2019-05-08 | GSE114949 | GEO
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