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TranscriptomicsTranscription profiling of Bacillus anthracis Sterne 34F2 cells and a sodA1 deletion mutant strain in reponse to different concentrations of paraquat and hydrogen peroxide
Bacillus anthracis Sterne 34F2 cells were grown in the absence of and in the presence of different concentrations of paraquat and hydrogen peroxide. Additionally, a deletion mutant strain lacking the sodA1 gene was also assayed with and without the addition of different concentrations of paraquat.
ORGANISM(S): Bacillus anthracis 
2007-04-12 | E-MEXP-1043 | biostudies-arrayexpress
UnknownComplete Genome Sequences of Mycobacteriophages Clautastrophe, Kingsolomon, Krypton555, and Nicholas.
Not available
S-EPMC5679797 | biostudies-literature
MetabolomicsMetabolic analysis of the response of Pseudomonas putida DOT-T1E strains to toluene using Fourier transform infrared spectroscopy and gas chromatography mass spectrometry
To elucidate any observable metabolic alterations during interactions of several strains of Pseudomonas putida (DOT-T1E, and its mutants DOT-T1E-PS28 and DOT-T1E-18) with the aromatic hydrocarbon toluene, metabolomic approaches were employed. Initially, Fourier-transform infrared (FT-IR) spectroscop...
2016-08-23 | MTBLS319 | MetaboLights
ProteomicsSART1 modulates Poly-(ADP-Ribose) accumulation and PARP1 chromatin localization
Protein modular domains mediate signal transduction events in all living cells and play a significant role in the cellular responses to the environment. The BRCT domain is a versatile protein modular domain that is a key integrator of signals in the DNA damage response. To identify components of the...
ORGANISM(S): Homo sapiens (Human) 
2024-11-04 | PXD047970 | Pride
Sart1 Parp1 Brct domain Dna damage response 
ProteomicsPhosphoproteomic Analysis of Lethal Castration Resistant Prostate Cancer Reveals Patient but not Metastatic Site Heterogeneity of Tyrosine Kinase Activation
Tissue lysis was performed as previously described (Drake, J.M., et al. Oncogene-specific activation of tyrosine kinase networks during prostate cancer progression. Proc Natl Acad Sci U S A 109, 1643-1648 (2012)) Briefly, greater than 300 mg of frozen tumor mass was homogenized and sonicated in urea...
ORGANISM(S): Homo sapiens (Human) 
2013-11-21 | PXD000238 | Pride
Tyrosine phosphorylation Human Prostate cancer 
ProteomicsImprovements in glycoproteomics through architecture changes to the Orbitrap Tribrid MS platform
Hardware changes introduced on the Orbitrap Ascend MultiOmics Tribrid MS include dual ion routing multipoles (IRMs) that can enable parallelized accumulation, dissociation, and Orbitrap mass analysis of three separate ion populations. The balance between these instrument functions is especially impo...
ORGANISM(S): Homo sapiens (Human) 
2025-09-14 | PXD058153 | Pride
N-glycopeptides Fragmentation Glycoproteomics Tandem mass spectrometry O-glycopeptides Electron transfer dissociation 
Unknown#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol.
Not available
S-EPMC8609898 | biostudies-literature
TranscriptomicsTranscription profiling of Arabidopsis shoots, roots and cell cultures
Microarray analysis of the changes in transcript abundance in cell culture and shoot
ORGANISM(S): Arabidopsis thaliana 
2008-07-19 | E-ATMX-31 | biostudies-arrayexpress
MetabolomicsEnvironmental Chemical Diethylhexyl Phthalate Alters Intestinal Microbiota Community Structure and Metabolite Profile in Mice
Exposure to environmental chemicals during windows of development is a potentially contributing factor in gut microbiota dysbiosis, and linked to chronic diseases and developmental disorders. We used a community-level model of microbiota metabolism to investigate the effects of diethylhexyl phthalat...
2022-01-17 | MTBLS861 | MetaboLights
UnknownComparative Effectiveness Research of Disease-Modifying Therapies for the Management of Multiple Sclerosis: Analysis of a Large Health Insurance Claims Database.
Not available
S-EPMC5447557 | biostudies-literature
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