Leonard J J - OmicsDI

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Unknown (2106)
Proteomics (70)
Genomics (64)
Transcriptomics (45)
Metabolomics (5)
Models (1)

Organisms

Homo sapiens (118)
Mus musculus (23)
Caenorhabditis elegans (4)
Apis mellifera (4)
Rattus norvegicus (4)
Escherichia coli (4)
Zea mays (3)
Danio rerio (3)
Drosophila melanogaster (2)
Flavobacterium johnsoniae (2)
Spodoptera frugiperda (2)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Xenopus laevis (1)
Anisakis simplex (1)
Citrobacter rodentium ICC168 (1)
Equus caballus (1)
Rousettus aegyptiacus (1)
Saccharomyces cerevisiae (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 5579 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. A130 (1)
Serpentes (1)
Sicarius thomisoides (1)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Trypanosoma cruzi (1)
Varroa destructor (1)
Verticillium dahliae JR2 (1)
Verticillium longisporum (1)

Organisms

Mustela nivalis vulgaris (3)

Repository

pride (59)
EGA (54)
biostudies-arrayexpress (51)
MassIVE (9)
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jPOST (2)
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Tissue

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Disease

Type 2 diabetes mellitus (2)
Cardiovascular system disease (1)
Crohn's disease (1)
Spinal cord (1)
Typhoid fever (1)

Technology Type

Mass Spectrometry (59)
Shotgun proteomics (31)
Bottom-up proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry (5)
Data-dependent acquisition (5)
Data-independent acquisition (3)
Gel-based experiment (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina (various), Illumina (Various) (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
DiaPASEF (1)
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Instrument Platform

Q Exactive (6)
Bruker Daltonics instrument model (2)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Affymetrix Gene Titan (1)
Gene Titan (1)
NextSeq 2000 (1)
Illumina HiSeq 4000 (1)
Bruker Impact II Q-TOF (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
TimsTOF Pro (1)
Exactive (Thermo Scientific) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2024 (14)
2025 (13)
2016 (10)
2026 (8)
2023 (8)
2010 (7)
2009 (7)
2019 (7)
2015 (6)
2012 (6)
2011 (6)
2021 (5)
2014 (5)
2022 (5)
2013 (4)
2008 (4)
2020 (4)
2018 (4)
2017 (3)
2004 (1)

UNIPROT ID/AC

O14543 (1)
O60674 (1)
P01588 (1)
P19235 (1)
P29350 (1)
P42229 (1)
Q9NSE2 (1)

CHEBI ID

CHEBI:10072 (3)
CHEBI:15354 (3)
CHEBI:15698 (3)
CHEBI:15891 (3)
CHEBI:15999 (3)
CHEBI:16199 (3)
CHEBI:16335 (3)
CHEBI:16344 (3)
CHEBI:16450 (3)
CHEBI:16675 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16742 (3)
CHEBI:16797 (3)
CHEBI:16919 (3)
CHEBI:16990 (3)
CHEBI:17012 (3)
CHEBI:17126 (3)
CHEBI:17154 (3)
CHEBI:17295 (3)
CHEBI:17562 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17724 (3)
CHEBI:17748 (3)
CHEBI:17750 (3)
CHEBI:17768 (3)
CHEBI:18107 (3)
CHEBI:18127 (3)
CHEBI:18261 (3)

Metabolite Name

1-linoleoyl-GPC (18:2) (2)
1-methylnicotinamide (2)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (2)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (2)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (2)
1-palmitoyl-GPC (16:0) (2)
1-palmitoyl-GPE (16:0) (2)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (2)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (2)
2'-deoxycytidine (2)
2'-deoxyuridine (2)
2,3-dihydroxyisovalerate (2)
2-hydroxy-3-methylvalerate (2)
2-hydroxyadipate (2)
2-hydroxyglutarate (2)
3-(4-hydroxyphenyl)lactate (2)
3-hydroxy-3-methylglutarate (2)
3-hydroxysebacate (2)
3-indoxyl sulfate (2)
3-methyl-2-oxobutyrate (2)
3-methyl-2-oxovalerate (2)
3-methylhistidine (2)
3-ureidopropionate (2)
4-acetamidobutanoate (2)
4-hydroxyphenylpyruvate (2)
4-imidazoleacetate (2)
4-methyl-2-oxopentanoate (2)
5-hydroxyindoleacetate (2)
5-hydroxylysine (2)
5-oxoproline (2)

IsPrivate

False (1)

First Public Date

2026 (4)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (26)
ChIP-seq (6)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
RNA-seq of non coding RNA (4)
RNA-seq of coding RNA (3)
Unknown experiment type (1)
Human - Single-cell sequencing (1)
Genotyping by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (245)
2025 (234)
2021 (229)
2023 (218)
2024 (214)
2020 (181)
2019 (146)
2017 (100)
2016 (96)
2018 (96)
2015 (93)
2014 (57)
2011 (40)
2012 (39)
2013 (36)
2026 (31)
2010 (29)
2009 (29)
2008 (24)
2007 (5)
2006 (5)
2004 (3)
2005 (2)
2001 (1)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (12)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (3)
Department of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria (3)
University of Victoria (3)
Department of Structural and Computational Biology, Max F. Perutz Laboratories (MFPL), Campus Vienna Biocenter 5, 1030 Vienna, Austria (2)
Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna (2)
Michael Smith Laboratories, Biochemistry and Molecular Biology, University of British Columbia, Canada (2)
AstraZeneca (1)
Biochemistry and Molecular Biologoy, University of British Columnbia, Canada (1)
Biochemistry and Molecular Biology and Michael Smith Laboratories, University of British Columbia, Canada (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia (1)
Biochemistry and Molecular Biology, University of British Columbia, Canada (1)
Brigham and Women's Hospital, Harvard Medical School (1)
Centre for High-Throughput Biology, University of British Columbia (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 ( lab head ) (1)
Centre for Proteome Research, Biochemistry and Systems Biology Department, University of Liverpool (1)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K. (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool; Liverpool, UK (1)
Deparment of Biochemistry and Molecular Biology, University of British Columbia, Canada (1)
Department of Biochemistry & Molecular Biology, Michael Smith Laboratories, University of British Columbia, 2125 East Mall, Vancouver, British Columbia, Canada V6T 1Z4 (1)
Department of Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Department of Biochemistry and Biology, UBC (1)
Department of Biochemistry and Molecular Biology Michael Smith Laboratories University of British Columbia (1)
Department of Biochemistry and Molecular Biology, Center for High-throughput Biology, UBC, Vancouver, Canada (1)
Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada (1)
Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada. Proteomics and Metabolomics Core Facility, Life Sciences Institute, University of British Columbia, Vancouver, BC, V6T 2A1, Canada. (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Canada (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver BC, Canada (1)
Department of Biochemistry and Molecular Biology; Michael Smith Laboratories; University of British Columbia (1)

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xref:PubMed:33911273 (2)

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The Saint-Leonard Urban Glaciotectonic Cave Harbors Rich and Diverse Planktonic and Sedimentary Microbial Communities.

Not available

S-EPMC11434022 | biostudies-literature

Comparative Effectiveness of Potential Elicitors of Plant Resistance against Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae) in Four Crop Plants.

Not available

S-EPMC4557932 | biostudies-literature

Runx+ HSPC, kdrl+ endothelial, and negative cells sorted from DMSO- or Lycorine-treated 3 dpf zebrafish embryos

The zebrafish is a powerful model for the study of hematopoietic stem and progenitor cells (HSPC). We have developed a novel HSPC-specific transgenic line (Runx1+23:GFP). We have used this line in time-lapse live imaging studies to track the migration of HSPC during development. We have also perform...

ORGANISM(S): Danio rerio

2015-01-15 | E-GEOD-56015 | biostudies-arrayexpress

Fanconi anemia group J mutation abolishes its DNA repair function by uncoupling DNA translocation from helicase activity or disruption of protein-DNA complexes.

Not available

S-EPMC2981534 | biostudies-literature

Verticillium dahliae Vta3 promotes ELV1 virulence factor gene expression in xylem sap, but tames Mtf1-mediated late stages of fungus-plant interactions and microsclerotia formation

Verticillium transcription activator of adhesion 3 (Vta3) is required for plant root colonization and pathogenicity of the soil-borne vascular fungus Verticillium dahliae [Bui et al., 2018]. In this study, we discovered that Vta3 contributes to the virulence of V. dahliae on tomato plants by promoti...

ORGANISM(S): Verticillium dahliae JR2

2023-01-18 | PXD039123 | Pride

Comparison of neonatal and adult rat ventricular cardiomyocytes

We addressed the question of which protein kinases are expressed in cardiomyocytes. We assessed the changes during postnatal development, comparing profiles in rat neonatal ventricular cardiomyocytes (NVMs) with adult ventricular cardiomyocytes (AVMs). Neonatal and adult rat ventricular cardiomyocyt...

ORGANISM(S): Rattus norvegicus

2015-01-01 | E-MTAB-2832 | biostudies-arrayexpress

The COMET toolkit for composing customizable genetic programs in mammalian cells.

Not available

S-EPMC7005830 | biostudies-literature

Contributions of unique intracellular domains to switchlike biosensing by Toll-like receptor 4.

Not available

S-EPMC4423667 | biostudies-literature

Molecular and Morphological Characterization of Exserohilum turcicum (Passerini) Leonard and Suggs Causing Northern Corn Leaf Blight of Maize in Bihar.

Not available

S-EPMC9405478 | biostudies-literature

Sports activities at a young age decrease hypertension risk-The J-Fit⁺ study.